Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2944 ATGGCGGCCACGAGCTTCGAAGTTGCTATATTTCTCCTCTGTCTTTTCATCATCAGCACAGTACTGATCCTCGCCGGCGACACTCCTCGTCCTGATTTCATTAGCATCGACTGTGGTGCACTCGAAGACTCGATAGACCCGTACAGTGGGTTCCCCTACAAATCAGACAAAAATCTGATAAATTCAGGAGTGGTCGGTCGGATATCCCCAGGTGTTGCCGATGATTACCAGTTGCAATACAAAAATCTAAGAAGCTTCCCGGAGGGAGTGAAGAACTGTTACACTCTCAGGCCAGAAGGCGGCGGAGACAACAATTACTTGGTCAGAGCCATCTTCGTGTATGGCAATTACGACGGAAAAAACTCCAACCCTGTATTTCAAATCTATCTGGGTGTTAATTTGTGGGCTACCATCACGTCCAACGATACTAGAGAAGAGGCCGTTTACATGGCTCCCATGGATTACATAGATGTATGCGTTGTGAATATTGGAGCTGGAGTTCCTTATATTTCTACCTTGGAATTACGACGTTTGGACAACTCCATTTATCGCACTCTTCCCCAGCTCTTCCCAGTCTTGTGGTATCGTTACGACGTTGGAACCGACGATAATGTCAGATACCCACAGGATAGTGATGATCGGATATGGATACCATACGACGAATCATCGTTGAAGAAGATACAGACAAGTGCAAGCATCACCAGTAGCGAAGATCCTTACAAATTACCAGAATCAATGTTGAAAACTGCCTATGGAACCCTAAATTCCAGCATTCCTTTCGTCTACAACTGGAGCCCTGAAGATGCCAGCTCTCTATTCTATTTCTGCTTTCATTTCGCTGAGATTGAGGAGTTGGATTCTGTAAGAGAAATGAGTATCGTCTTGAATGACAACCAGATCATTGCACAATCTGTGAAGCTCCAGTATCTCAAGCCACAAACCATATGCTCATCTTCGGCTGGTCTCCCCGTTAATCTCAATCAAGATAATTATTTACGGATTTCTGCAGCCTCTGGTTCGAATCTTCCTCCCATCATCAATGGCCTCGAGGTTTTTCATTTGCGGGAGTTCTCTGATTCGCCTACATTCTTATGGGACGTTAACGCCATAAGGGATATCAAGAAGACGTTTAAACTATTGAAGAGGGACTGGCAAGGGGATCCATGTTTGCCTGCACGTTCTGTATGGAATGGTTTAAACTGCAGCCATAGTAATCCCCCAAGGATAATTTCATTAAACTTGAGCAGGAGCAAGTTAACAGGAGAGATCCCATTTTCCATCTCCAATCTCACTCAATTGGAGACTCTGGATTTATCCTACAATGACTTGAGTGGATCACTTCCAGAATTCTTAGCGCAACTACCTCGTTTGAAAATCCTCAATTTAGTTGGGAATAATCTTGGAGGCATAGTTCCTGAAGCACTTCTTGTGAAATCTAGAGATGGAGGCTTGGATTTGAGTGTGGCTGATAATCCAGAACTCTGCTTGTCACCTCCTTGCACGAAAAAGAGTCATTCTGTTGTTGTTCCTGTTATCATTTCTATCTTGGCAGCCTCTGTTCTAATAATCTGCTTCGTCTTACTTATAATCCATAGAAGAAACAAGAAAAAGAGTTCCAAAGAGAAGATTACACTGAAGCCAAAAAATCGGGAGTACAGTTACTCGGAAGTTGTGAATATTACTGATAATTTCAAACACGTTATTGGAGAAGGAGGGTTTGGGAAAGTATATAAAGGTGTATTGAAAGATAAAACTATGGTTGCTGTTAAGTTGTTGTCTTCAAAATCAAAGCAGGGCGACAAGGAATTTCAAGCTGAGGCACAACTCTTAATGATCGTTCATCACCGAAACTTGGTTTCTCTTGTTGGATATTGCTACGAGGGCGACACCAAGGCACTCATTTATGAACACATGGTCAATGGAAATTTGCAGCAACACTTGTCTGAAACAAACACAAATGTTCTGAGTTGGAACGAAAGACTTCAAATTGCAGTAGATGCAGCAAATGGGCTTGAGTATCTACACAATGGCTGCAAGCCACCAATAGTTCACAGAGACTTGAAATCTGCCAACATACTACTAGATGACATGATGCAAGCCAAAATAGCTGATTTTGGATTATCTAGAACTTCTCCAACTGAAAGTCAATCTCACATAATTACCACACAGTTAGCTGGAACACCTGGGTACCTTGATCCCGAAAGCCAAACATGTGGAAATTTGAATAAGAAAAGTGACGTTTATAGTTTTGGGATAGTCTTATTTGAGTTGATCACCGGGTGTCGTGTAATAACAAGGAGCTACAGTGGAAATTATAATCACATTCTAGGGACTGTTACTCCATTAATCAATAGTGGGAATATTGAAGCTTTGATTGATACGAGAATTAAAGGAAAAGTTAACCAAAATTCAGCCTGGAAAATGGCTGAGATAGCCATGTCATGCACCCAACCAACTGGTGACCAAAGGCCAGACATAAGTGCTGTTTTAGAGGAGCTTACGGAGTGTTTGGCCATGGAGCGAAGAACATCTCCACCAATTTATGAATTGTCTTCAATTAGTTTAGCTGAGTCAGATATTGCTCTTTGTCCCAGGTGA 2598 42.19 MAATSFEVAIFLLCLFIISTVLILAGDTPRPDFISIDCGALEDSIDPYSGFPYKSDKNLINSGVVGRISPGVADDYQLQYKNLRSFPEGVKNCYTLRPEGGGDNNYLVRAIFVYGNYDGKNSNPVFQIYLGVNLWATITSNDTREEAVYMAPMDYIDVCVVNIGAGVPYISTLELRRLDNSIYRTLPQLFPVLWYRYDVGTDDNVRYPQDSDDRIWIPYDESSLKKIQTSASITSSEDPYKLPESMLKTAYGTLNSSIPFVYNWSPEDASSLFYFCFHFAEIEELDSVREMSIVLNDNQIIAQSVKLQYLKPQTICSSSAGLPVNLNQDNYLRISAASGSNLPPIINGLEVFHLREFSDSPTFLWDVNAIRDIKKTFKLLKRDWQGDPCLPARSVWNGLNCSHSNPPRIISLNLSRSKLTGEIPFSISNLTQLETLDLSYNDLSGSLPEFLAQLPRLKILNLVGNNLGGIVPEALLVKSRDGGLDLSVADNPELCLSPPCTKKSHSVVVPVIISILAASVLIICFVLLIIHRRNKKKSSKEKITLKPKNREYSYSEVVNITDNFKHVIGEGGFGKVYKGVLKDKTMVAVKLLSSKSKQGDKEFQAEAQLLMIVHHRNLVSLVGYCYEGDTKALIYEHMVNGNLQQHLSETNTNVLSWNERLQIAVDAANGLEYLHNGCKPPIVHRDLKSANILLDDMMQAKIADFGLSRTSPTESQSHIITTQLAGTPGYLDPESQTCGNLNKKSDVYSFGIVLFELITGCRVITRSYSGNYNHILGTVTPLINSGNIEALIDTRIKGKVNQNSAWKMAEIAMSCTQPTGDQRPDISAVLEELTECLAMERRTSPPIYELSSISLAESDIALCPR 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47765029 47770618 - Lag0003064.1 Lac4g2944 606476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2944 865 CDD STKc_IRAK 568 835 - -
Lac4g2944 865 ProSitePatterns Protein kinases ATP-binding region signature. 568 590 IPR017441 GO:0005524(InterPro)
Lac4g2944 865 Pfam Leucine rich repeat 411 467 IPR001611 GO:0005515(InterPro)
Lac4g2944 865 Gene3D Transferase(Phosphotransferase) domain 1 638 847 - -
Lac4g2944 865 PANTHER OS07G0107800 PROTEIN-RELATED 32 842 - -
Lac4g2944 865 ProSiteProfiles Protein kinase domain profile. 562 837 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2944 865 SUPERFAMILY L domain-like 395 475 - -
Lac4g2944 865 SUPERFAMILY Protein kinase-like (PK-like) 541 833 IPR011009 -
Lac4g2944 865 Gene3D Ribonuclease Inhibitor 367 482 IPR032675 -
Lac4g2944 865 Pfam Protein tyrosine and serine/threonine kinase 564 833 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2944 865 SMART serkin_6 562 837 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2944 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2944 865 ProSiteProfiles Leucine-rich repeat profile. 432 454 IPR001611 GO:0005515(InterPro)
Lac4g2944 865 FunFam Leucine-rich repeat receptor-like kinase 365 496 - -
Lac4g2944 865 Pfam Malectin-like domain 36 353 IPR024788 -
Lac4g2944 865 Gene3D Phosphorylase Kinase; domain 1 544 637 - -
Lac4g2944 865 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 638 845 - -
Lac4g2944 865 FunFam Leucine-rich repeat receptor-like protein kinase 535 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1513 Lac-Chr12:28076363 Lac4g2944 Lac-Chr4:47765029 3.70E-241 dispersed
Lac12g1514 Lac-Chr12:28081739 Lac4g2944 Lac-Chr4:47765029 2.80E-12 dispersed
Lac4g2940 Lac-Chr4:47726613 Lac4g2944 Lac-Chr4:47765029 7.30E-193 dispersed
Lac4g2941 Lac-Chr4:47739493 Lac4g2944 Lac-Chr4:47765029 2.40E-214 dispersed
Lac4g2942 Lac-Chr4:47750573 Lac4g2944 Lac-Chr4:47765029 8.50E-133 dispersed
Lac4g2944 Lac-Chr4:47765029 Lac4g2956 Lac-Chr4:47870109 2.60E-158 dispersed
Lac4g2943 Lac-Chr4:47756405 Lac4g2944 Lac-Chr4:47765029 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86167 PF12819 Malectin_like 3.80E-82 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2944 - - - 0.0