Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2948 ATGGATGTTTCAACATATTTACTCTTTGCTTTTCTGGGTGGCTTAGTTCTTGTCAATCTTGTTCAAGCTCAAGGTCAATTAGATTGTGGGTTGCCAGCAAATACAGACTACATCGAACCAACATTCACGCTTAAATTTACTTCTGATGCTGCTTATATAAACAGTGGTGTAAGCAAAAGCTTATCCTCTAATTATCAAGAATTTCTACCGAAACAATATCATCATGTTAGAAGCTTTCCCCAAGGACGCAGGAATTGTTACAACATAAGCGTAAAAAAGAATACCAAATATTTGATGCGAGCAAGTTTCTTGTATGGGAATTACGATGGGCTTAACCAACTTCCAAAATTCAATCTCTACTTTGGAGATAGCTATTGGAAGACAGTGAATTTCACAGATGAAAACACAGATACCACAACAGATTCCATACATGTGACCTCAACCAATCAAGTACAGATTTGTCTTGTCAACACAAACGAGGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTACCCAATGAGACTTATAAGTTCTTGACAAGGTCATTGTTGCTTTACAATCGATTAGATATGGGTTCAACAACGAATAAAACATACAGGTTTCCTGATGATATATATGATCGATTTTGGGTGCCTTTCAATTGGTACGAGTGGACAAGCATAAGTACCACACTTACAATAGATTCAAACGATAATAATTATTACCAGCCAGGGTCCGCTGTGATGGGAACTGCAGCTATTCGAATAGATACAAAAAAGGCAATGGAAATCTGGTGGGAGCCTGAAGATGTAAACACTCAGTATTATGTATACATGCACTTTGCTGAAGTTGAAAATCTTGAAGCCAATCAAACCAGAGGATTCAATGTCACTTATAATGGGAGTTTTTGGTATGGTCCTCTCATTCCCAGCTACTTGTCCACCATAACTCTTTTTAGTAGAGCACCTTTACCAATTCCAACTAAAAAGCATCTCTTCTCACTCATTCCAATTGAAAATTCAACACACCCTCCAATCATCAATGCTATGGAAATTTATTCTGTACTAGATCTCTCACAACTAACATCAGATCAAAGAGATGTGGATGCCATACAAAACATCAAGTCAACTTATGGAATAGTCAGAGATTGGGAAGGAGATCCATGTGTTCCAAGAGCATACCCTTGGGAGGGTATAGATTGCACCAAAACCAATGAAACCACTCCTAGAATTGTCTCTTTGAATTTGTCATCAAGTGGATTGTCAGGGGAGATTTCTCCAAATATATCCTATCTAGAAATGTTACAGATCTTGGATTTGTCAAACAATGACTTTACAGGAAATATCCCGGATTTTTGGTCTAAATTATCAAACCTTAAAGTCTTAAAGTTGGATAACAACAAGCTCACAGGCTCAGTTCCATCTGAACTCGTTAAAAGATTCAACAATGGTTCATTATCCTTAAGCGTTGAAGGAAATCCAAATCTAGATTATTGTATATCAGATTCATGCAAGAGCAAGAAGAACAATAATAATGTTGTTATTCCAATTGTAGCATCAATTGGTGGATTAATAGCGATAGTTGTGATTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACAACAAAATGGAACTGTTGGTTCAAAGATGGTAGTGGATCAGTTAGCTGCCAATAACAATAACAAGCAAATAAAAAGTGATCAGTTTTTGGAGACAAGGAGGCGGCAGTTCACATATTTAGAAGTGATGAAGATGACAAAGAATTTTGAGAGAATTCTGGGGAAAGGAGGTTTTGGGATGGTTTACTATGGAGTCATAGATGACATTCAAGTGGCTGTGAAGATGCTTTCTCAAGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACTCTTCTTTTGAGAGTTCACCATAAAAACTTGACGAGTCTTGTGGGGTATTTGAATGAAGGAGAACACTTTGGACTCATTTATGAATTCATGGCCAATGGAAACTTAGCCGAGCATCTTTTAGAGAAGAGTTCATGTTCACATGTCTTAAGTTGGCAAGATAGACTTCGAATAGCCATGGATGCAGCACAAGGATTGGAATATCTTCATGATGGTTGCAAGCCACCCATAATCCACAGAGATGTGAAAACAACAAACATCTTACTGACAGAGGATTTCCAAGCCAAACTTGCAGATTTTGGTTTGTCCAAAAGCTTCCCTGTAGATACCAACAAAACCAACAACTACATGTCCACCATTGTTGCTGGCACTCCTGGCTACCTTGATCCAGATTACTACATCTCGAACAGGCTGACGGAGAAAAGCGATGTATATAGCTTTGGAGTTACATTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGATCAAGTGAAGAAAATGTTCATATTGGCAAATGGGTAAACTCGAAAGTGGGTCAAGGGGACATAAACGGAATAGTCGACGAAAGACTGAGAGGAAAATATGATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCAGTGAATTGTGTATCTGCGAACTCTGCAAAACGGCCGACGATGAACCAAGTGGTGGCGGAGCTGAAGAGTTGCTTGGCCATGGAACTGGAACGGACGCCGGAGAATAATCCAGGTCTCGATTCCACCAATTCTGTTAACATCATGTCCATCGTTATGGATTACAGTGGAGCCCTTCCAATGGCGAGGTGA 2700 39.0 MDVSTYLLFAFLGGLVLVNLVQAQGQLDCGLPANTDYIEPTFTLKFTSDAAYINSGVSKSLSSNYQEFLPKQYHHVRSFPQGRRNCYNISVKKNTKYLMRASFLYGNYDGLNQLPKFNLYFGDSYWKTVNFTDENTDTTTDSIHVTSTNQVQICLVNTNEGTPFISSLEFRPLPNETYKFLTRSLLLYNRLDMGSTTNKTYRFPDDIYDRFWVPFNWYEWTSISTTLTIDSNDNNYYQPGSAVMGTAAIRIDTKKAMEIWWEPEDVNTQYYVYMHFAEVENLEANQTRGFNVTYNGSFWYGPLIPSYLSTITLFSRAPLPIPTKKHLFSLIPIENSTHPPIINAMEIYSVLDLSQLTSDQRDVDAIQNIKSTYGIVRDWEGDPCVPRAYPWEGIDCTKTNETTPRIVSLNLSSSGLSGEISPNISYLEMLQILDLSNNDFTGNIPDFWSKLSNLKVLKLDNNKLTGSVPSELVKRFNNGSLSLSVEGNPNLDYCISDSCKSKKNNNNVVIPIVASIGGLIAIVVISIIILWIVKSRKKQQNGTVGSKMVVDQLAANNNNKQIKSDQFLETRRRQFTYLEVMKMTKNFERILGKGGFGMVYYGVIDDIQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGEHFGLIYEFMANGNLAEHLLEKSSCSHVLSWQDRLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTEDFQAKLADFGLSKSFPVDTNKTNNYMSTIVAGTPGYLDPDYYISNRLTEKSDVYSFGVTLLEIISCRPVISRSSEENVHIGKWVNSKVGQGDINGIVDERLRGKYDVNSVWKAVEIAVNCVSANSAKRPTMNQVVAELKSCLAMELERTPENNPGLDSTNSVNIMSIVMDYSGALPMAR 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47815528 47820828 + Lag0003068.1 Lac4g2948 606480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2948 899 ProSiteProfiles Protein kinase domain profile. 585 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2948 899 Gene3D Transferase(Phosphotransferase) domain 1 660 880 - -
Lac4g2948 899 SMART serkin_6 585 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2948 899 FunFam Leucine-rich repeat receptor-like kinase 361 493 - -
Lac4g2948 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2948 899 Pfam Malectin-like domain 27 350 IPR024788 -
Lac4g2948 899 Gene3D Ribonuclease Inhibitor 363 491 IPR032675 -
Lac4g2948 899 SUPERFAMILY Protein kinase-like (PK-like) 563 858 IPR011009 -
Lac4g2948 899 PANTHER OS07G0107800 PROTEIN-RELATED 24 865 - -
Lac4g2948 899 SUPERFAMILY L domain-like 389 484 - -
Lac4g2948 899 CDD STKc_IRAK 591 859 - -
Lac4g2948 899 FunFam Leucine-rich repeat receptor-like protein kinase 558 659 - -
Lac4g2948 899 ProSitePatterns Protein kinases ATP-binding region signature. 591 612 IPR017441 GO:0005524(InterPro)
Lac4g2948 899 Gene3D Phosphorylase Kinase; domain 1 572 659 - -
Lac4g2948 899 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 660 870 - -
Lac4g2948 899 Pfam Leucine Rich Repeat 430 451 IPR001611 GO:0005515(InterPro)
Lac4g2948 899 Pfam Leucine Rich Repeat 453 472 IPR001611 GO:0005515(InterPro)
Lac4g2948 899 Pfam Protein tyrosine and serine/threonine kinase 587 858 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2948 Lac-Chr4:47815528 Lac4g2950 Lac-Chr4:47831658 0.00E+00 dispersed
Lac4g2948 Lac-Chr4:47815528 Lac4g2949 Lac-Chr4:47826956 0.00E+00 tandem
Lac11g0797 Lac-Chr11:8449696 Lac4g2948 Lac-Chr4:47815528 1.80E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86168 PF12819 Malectin_like 3.50E-111 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2948 - - - 0.0