Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2949 ATGGATGTTATGAAACATTTGCTCTTTGCTTTTCTAGGTGGCGTAGCTCTTGTCATTCTTGTTCAAGCTCAAGATCAATTAGGTTTCATCAGCTTAGATTGTGGACTACCAAGGAATGCAAGTTATATTGAACCAACAACAACACTTCGCTTTACTTCTGATGGTGACTACATAAACAGTGGTGTAAGCAAAAGCTTATCTTCTAATTATCAAACTTTATTTTACCAACAATATCATCATGTTAGAAGCTTTCCCCAAGGACGAAGGAATTGTTACAATATAGACATTAAAAGAGACACCAAGTATTTGATGCGAGCAAGTTTCTTATATGGGAATTACGATGGGCTTGGTAAACTGCCGGAATTCGATCTGTACTTTGGAGATAGCTTATGGGCAACAGTGAAATTCACTGATGAAAGCATTGATACCACAGTAGACATCATATATGTGACTTCAAACAATCAAATACAAATTTGTCTTGTAAATACAAACAGCGGAACTCCATTCATCTCTTCGTTGGAATTTAGACCTTTGTCCAATGAGACTTATAAGGTCTTGACAAGATCATTGTCGCTTTATAATCGACTAGATTTGGGTACAACAACAAATAGAACATACAGGTTTCCTGATGATATCTATGATCGTTTTTGGGTGCCTTTCAACTTTGACGAGTGGACAAGCATAAGTACTACACTTAAGATAGGTCATGATGATCATAATTATTACCAGCTAGGATCTGCTGTCATGGGAACTGCAGCTGTTCAAATAAATAGAAAAGAGTCATTGCAGATACAGTGGGAGTCAGAAGATGAAAACACCGAGTATTATGTATATATGCACTTTGCTGAACTAGAAAATCTCCAGCCCAATCAAACAAGAGGATTCAACATCACCTATAATGGCGATTATATGTATGGACCTTTTAATCCCCATCCCTTGAACACAACAACAATTTATACTACAAGACCAATACCACTGGAGCCAACCAAAACGCATGTATTCTCACTTGTTCCAATTGAAAACTCAACACTTCCTCCGATCCTAAATGCTATGGAAACTTATTCCGTAATAGATCTCTTAGAACTAGCATCAGATCAAGGAGATGTGGAGGCAATAAAAAACATCAAGTCAACCTATGGAATAGTCAAAGATTGGGAAGGAGATCCATGCGTTCCAAGAGCATGCCCTTGGGAGGGTATAGATTGTACCAAAACCAACGAAACTACTCCTAGAATCGTGTCTTTGAATTTGTCATCAAGTGGATTGACAGGGAAAATGTCTTCAGATATATCCAATCTAGAAATGATACAAACTCTGGACTTGTCCAACAATAACCTGACAGGAAATATTCCTGCTTTTCTTTCTCAATTGCCAAAGCTCAAAGTCCTAAAGTTAGACAACAACAAGTTCACAGGAGTTGTTCCATCTGAACTCGTTAGGAAATTCGATGATGGTTCATTATTGTTAAGTGTTGAAGGGAATCCAAATCTAGATGCATGTCTAACAGATTCATGTGCGAAGAAGAGTAAGAAAAATAATGTCGTCATCCCAATAGTAGCAACGATTGGTGGATTGGTAGCCATAGCTGCAACTGCAACTATCATCTTTTGGATTGTTAAATCAAAGAAGAAACGAGAAAATGAAACTATTGCTTCACTAATAGATCATTCAGCAACCAAACACCAAAATAGTGACTTATTGGAAACAAAAAGACGACAATTCACTTACTCAGAAGTAATGAAGATGACAAATAATTTTGAGAGAATTTTGGGCAAAGGAGGTTTTGGGATGGTTTACTATGGTATAGTAGACAATGTTCAAGTAGCTGTAAAGTTACTTTCTCAAGCATCAGGGCAGGGTTATCAACAATTTCAAGCAGAGGTTACACTTCTTATGAGAGTTCACCATAAAAACTTGACAAGTCTTGTGGGATATTTGAAGGAAGGAGACAAACTTGGCCTCATTTATGAGTTCATGGCCAATGGAAACTTAGCAGAGCATCTTTCAGAGACGAGTTCACGTGTCTTAAGTTGGCAAGATAGACTCCAGATAGCCATGGATGCAGCACAAGGATTGGAGTACCTGCACGATGGTTGCAAACCGCCCATAATCCACAGAGATGTGAAAACGACAAACATATTATTGACAGAGAATTTCCAAGGCAAGCTTGCAGACTTTGGTTTGTCCAAAAGTTTCCCAATAGAGGGCAACAACACCTACATGTCCACCATTGTTGCCGGCACTATTGGTTATCTTGATCCAGAGTACTATAAATCAAACAGGTTGACTGAGAAAAGTGATGTGTATAGCTTCGGAGTTACCCTATTGGAGATGATCAGCTGCAGACCTGTAATACCACGAACTGACAATGATGTTCATATCATTAAATGGGTAAACTCCCTGGCTGCTCAAGGGGACATTAATGGCATAATCGACCGAAGATTGGATAGAATCTATGATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCAATGGACTGTGTATCTGAGAGCCCTGCAAGAAGACCGACAATGAGCCAAGTGGTGGCGGAACTGAAGAATTGCTTAGCCATAGAATTGGATCGAACGCCGGAGAATCGAGCTTTCGATTCGACGAATTCCATCAACACGATGTCCATTGCTATGGATTACAGTGTATCCAGGCCAATGGCAAGATGA 2679 39.12 MDVMKHLLFAFLGGVALVILVQAQDQLGFISLDCGLPRNASYIEPTTTLRFTSDGDYINSGVSKSLSSNYQTLFYQQYHHVRSFPQGRRNCYNIDIKRDTKYLMRASFLYGNYDGLGKLPEFDLYFGDSLWATVKFTDESIDTTVDIIYVTSNNQIQICLVNTNSGTPFISSLEFRPLSNETYKVLTRSLSLYNRLDLGTTTNRTYRFPDDIYDRFWVPFNFDEWTSISTTLKIGHDDHNYYQLGSAVMGTAAVQINRKESLQIQWESEDENTEYYVYMHFAELENLQPNQTRGFNITYNGDYMYGPFNPHPLNTTTIYTTRPIPLEPTKTHVFSLVPIENSTLPPILNAMETYSVIDLLELASDQGDVEAIKNIKSTYGIVKDWEGDPCVPRACPWEGIDCTKTNETTPRIVSLNLSSSGLTGKMSSDISNLEMIQTLDLSNNNLTGNIPAFLSQLPKLKVLKLDNNKFTGVVPSELVRKFDDGSLLLSVEGNPNLDACLTDSCAKKSKKNNVVIPIVATIGGLVAIAATATIIFWIVKSKKKRENETIASLIDHSATKHQNSDLLETKRRQFTYSEVMKMTNNFERILGKGGFGMVYYGIVDNVQVAVKLLSQASGQGYQQFQAEVTLLMRVHHKNLTSLVGYLKEGDKLGLIYEFMANGNLAEHLSETSSRVLSWQDRLQIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQGKLADFGLSKSFPIEGNNTYMSTIVAGTIGYLDPEYYKSNRLTEKSDVYSFGVTLLEMISCRPVIPRTDNDVHIIKWVNSLAAQGDINGIIDRRLDRIYDVNSVWKAVEIAMDCVSESPARRPTMSQVVAELKNCLAIELDRTPENRAFDSTNSINTMSIAMDYSVSRPMAR 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47826956 47830648 + Lag0003069.1 Lac4g2949 606481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2949 892 SUPERFAMILY Protein kinase-like (PK-like) 562 852 IPR011009 -
Lac4g2949 892 PANTHER OS07G0107800 PROTEIN-RELATED 20 860 - -
Lac4g2949 892 Pfam Protein tyrosine and serine/threonine kinase 586 852 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2949 892 SMART serkin_6 584 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2949 892 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524(InterPro)
Lac4g2949 892 ProSiteProfiles Protein kinase domain profile. 584 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2949 892 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 659 864 - -
Lac4g2949 892 Pfam Leucine Rich repeats (2 copies) 437 471 IPR025875 -
Lac4g2949 892 SUPERFAMILY L domain-like 386 478 - -
Lac4g2949 892 FunFam Leucine-rich repeat receptor-like kinase 367 500 - -
Lac4g2949 892 Gene3D Ribonuclease Inhibitor 369 490 IPR032675 -
Lac4g2949 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2949 892 Gene3D Transferase(Phosphotransferase) domain 1 659 874 - -
Lac4g2949 892 CDD STKc_IRAK 590 854 - -
Lac4g2949 892 FunFam Leucine-rich repeat receptor-like protein kinase 560 658 - -
Lac4g2949 892 Pfam Malectin-like domain 32 356 IPR024788 -
Lac4g2949 892 Gene3D Phosphorylase Kinase; domain 1 566 658 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0800 Lac-Chr11:8482310 Lac4g2949 Lac-Chr4:47826956 2.50E-55 dispersed
Lac11g0822 Lac-Chr11:8783096 Lac4g2949 Lac-Chr4:47826956 1.50E-105 dispersed
Lac11g0825 Lac-Chr11:8823229 Lac4g2949 Lac-Chr4:47826956 9.70E-210 dispersed
Lac13g0098 Lac-Chr13:688584 Lac4g2949 Lac-Chr4:47826956 4.50E-108 dispersed
Lac2g1049 Lac-Chr2:8379646 Lac4g2949 Lac-Chr4:47826956 4.70E-159 dispersed
Lac4g2949 Lac-Chr4:47826956 Lac4g2952 Lac-Chr4:47843719 2.30E-258 dispersed
Lac4g2948 Lac-Chr4:47815528 Lac4g2949 Lac-Chr4:47826956 0.00E+00 tandem
Lac4g2949 Lac-Chr4:47826956 Lac4g2950 Lac-Chr4:47831658 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86169 PF12819 Malectin_like 6.80E-112 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2949 - - - 0.0