Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2950 ATGAAGGTGATTGTGGATGTTATGAAACATTTGCTCCTTGCTTTTCTGGGTGGCTTAGCTCTTGTCATTCTTGTTCAAGCTCAAGATCAATCAGGCTTCATTAGCTTAGATTGTGGATTGCCAACAGATACAAGTTACATTGAACCAACAACAAAACTTCGCTTTACTTCTGATGTTGACTATATTAACAGTGGTGTAAGCAAAAGTTTATCTCCTAATTATCAAAAAGTGTTTTTTCGACAATATCATCATGTTAGAAGCTTTCCCGAAGGACGTAGGAATTGTTACAATATAAGCATTAAAAAAGATGCCAAATATTTGATGCGAGCAAGTTTCTTGTACGGAAATTATGATGGACTCAGTAAACTGCCAACATTTGATCTTTACTTTGGAGATAGCTTGTGGAGGACAATGAATTTCACTGATGACAGCATTGATTTCACAATAGACACCATACATGTAACCTCCAACAATCATATACAAATTTGTCTTGTAAACACAAACAATGGAACTCCATTCATCTCTTCGTTGGAATTCAGACCTTTGCCTAATGAGACTTATGAAGTCCTGTCAAGTTCATTATTGCTTCAAGGTCGACTCGATTATGGTACAACAACAAATAAAACATACAGGTTTCCAGATGATTTGTATGATCGAATTTGGTTGCCTTACAACTGGCCGGAGTGGACAAGCATAAGTACCACACTTACCATTGATGTTAATAGTAATAACTTTTACCAGCCAGGATCTACTGTCATGGGAACCGCAGCCATTCGAATAAATACAAGCAAGCCCTTGGAGTTGTGGTGGGAGCCGGAAGATATAAACACCAAGTTTCATGTATTCATGCACTTTGCTGAAGTTGTAGATCTACAAGCCAATCAAACAAGAGGATTCAACATCACCTACAATGGGGATTATTGGTACGGACCTCTTATTCCCAACCACTTGTCCACAACAACGATCTTTAGTCGAAGACCATTACCGGTGCCAACTAAAAAGCATCTATTTGCACTGGTTCAAATCGAAAATTCAACACTCCCTCCGATCATAAATGCCATAGAAGTTTACTCTGTGATTGATCTTTTAGAACTAACATCACATCAAAGAGATGTGGATGCAATCAAAAACATCAAATCAACTTATGGAATACTCAAAGATTGGGAAGGAGATCCATGCATTCCAAGAGCATACCCTTGGGAGGGTATAAATTGTACCAATGAAACTATTAGGATTGCGTCTTTGAATTTGTCATCAAGTGGATTGGCCGGGGAGATCTCATCATATATATCCAATCTAGAAATGATAGAAACTTTGGACTTGTCGAACAATAACTTGACAGGACATATTCCTGACTTTCTAACTAAATTATCAAACCTAAAAGTCTTAAAGTTAGAGAACAACAAGCTCACAGGGTCTGTTCCATCTGAACTCATTAAGAAATTGGATGATGGTTTACTATTGTTAAGTGTTGGAGGGAACCCAAATCTTGAAGCATGTCTGTCAGATTCATGTGCAAAGAGTAAGAAGAATAATGTGGTTATTCCGATAGTAGCAACAATTGGTGGATTGGTAGCTATCGTTGCAATTGCAACTATCATCTTTTGGATTGTTAAGTCAAAGAAGAAACAACAAAAAGAAACTATTGTTTCACTAGTAGATCATTCAGAAACCAAACAGCAAAATAGTGACTTATTGGAAACAAAAAGACGACAATTTACATACTCAGAAGTAGTGAAGATGACAAATAATTTTGAGAGAATTTTGGGCAAAGGAGGTTTTGGAATGGTTTACTATGGTCTTGTAGACAACGTTCAAGTGGCTGTAAAGTTACTTTCTCAAGCATCAAAGCAAGGTTATCAACAGTTTCAAGCAGAGGTACTACGTTATACTTCTTTGAGAGTTCACCATAAAAACTTGACAAGTCTTGTGGGGTATTTGAATGAAGGAGACCACCTCGGCCTTATATATGAGTTCATGGCCAATGGAAACTTAGCAGAGCATCTTTCAGAGAAGAGTAAACGTGTCTTAAGTTGGCAAGATAGACTCAAAATAGCCATAGATGCAGCACAAGGATTGGAGTACCTGCACGATGGTTGCAAACCGCCCATAATCCACAGAGATGTGAAAACCACAAACATCTTATTGACAGAGAATTTCCAAGGCAAACTTGCAGATTTTGGTTTGTCCAAAAGCTTCCCAACAGAGGGCAACAACACCCACGTGTCCACCATTGTTGCTGGCACCATTGGTTACCTTGATCCAGAGTACTATGAATCAAACAGGTTGACTGAGAAAAGCGATGTGTATAGCTTCGGAGTTACCCTAATGGAGATAATCAGCTGCAAACCTGTAATACCACGAACTGACAATGATGTTCATATCATCAAATGGGTAAACTCCCAAGCTGCTCAAGGGGATATTAATGGCATAATTGATCCAAGATTGGATAGAAATTATTATGTGAACTCAGTTTGGAAGGCAGTGGAAATAGCAATGGATTGTGTATCTGAGAGCCCTGCAAGAAGACCGACAATGAGCCAAGTGGTGGCGGAACTGAAGAATTGCTTAGCCATAGAATTGGAACGAACGCCGGAGAATCGAGCTTTGAATTCGCCGAATTCCATCAATACAATGTCCATTGTTTTGGATGACGGTGTATCTGGGCCAATGGCAAGATGA 2682 38.81 MKVIVDVMKHLLLAFLGGLALVILVQAQDQSGFISLDCGLPTDTSYIEPTTKLRFTSDVDYINSGVSKSLSPNYQKVFFRQYHHVRSFPEGRRNCYNISIKKDAKYLMRASFLYGNYDGLSKLPTFDLYFGDSLWRTMNFTDDSIDFTIDTIHVTSNNHIQICLVNTNNGTPFISSLEFRPLPNETYEVLSSSLLLQGRLDYGTTTNKTYRFPDDLYDRIWLPYNWPEWTSISTTLTIDVNSNNFYQPGSTVMGTAAIRINTSKPLELWWEPEDINTKFHVFMHFAEVVDLQANQTRGFNITYNGDYWYGPLIPNHLSTTTIFSRRPLPVPTKKHLFALVQIENSTLPPIINAIEVYSVIDLLELTSHQRDVDAIKNIKSTYGILKDWEGDPCIPRAYPWEGINCTNETIRIASLNLSSSGLAGEISSYISNLEMIETLDLSNNNLTGHIPDFLTKLSNLKVLKLENNKLTGSVPSELIKKLDDGLLLLSVGGNPNLEACLSDSCAKSKKNNVVIPIVATIGGLVAIVAIATIIFWIVKSKKKQQKETIVSLVDHSETKQQNSDLLETKRRQFTYSEVVKMTNNFERILGKGGFGMVYYGLVDNVQVAVKLLSQASKQGYQQFQAEVLRYTSLRVHHKNLTSLVGYLNEGDHLGLIYEFMANGNLAEHLSEKSKRVLSWQDRLKIAIDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQGKLADFGLSKSFPTEGNNTHVSTIVAGTIGYLDPEYYESNRLTEKSDVYSFGVTLMEIISCKPVIPRTDNDVHIIKWVNSQAAQGDINGIIDPRLDRNYYVNSVWKAVEIAMDCVSESPARRPTMSQVVAELKNCLAIELERTPENRALNSPNSINTMSIVLDDGVSGPMAR 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47831658 47835384 + Lag0003070.1 Lac4g2950 606482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2950 893 Pfam Leucine Rich Repeat 459 478 IPR001611 GO:0005515(InterPro)
Lac4g2950 893 Pfam Leucine Rich Repeat 436 457 IPR001611 GO:0005515(InterPro)
Lac4g2950 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2950 893 SUPERFAMILY Protein kinase-like (PK-like) 562 853 IPR011009 -
Lac4g2950 893 ProSitePatterns Protein kinases ATP-binding region signature. 589 610 IPR017441 GO:0005524(InterPro)
Lac4g2950 893 Pfam Protein tyrosine and serine/threonine kinase 585 853 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2950 893 CDD STKc_IRAK 589 855 - -
Lac4g2950 893 Gene3D Phosphorylase Kinase; domain 1 565 659 - -
Lac4g2950 893 Pfam Malectin-like domain 36 359 IPR024788 -
Lac4g2950 893 PANTHER OS07G0107800 PROTEIN-RELATED 24 861 - -
Lac4g2950 893 ProSiteProfiles Protein kinase domain profile. 583 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2950 893 FunFam Leucine-rich repeat receptor-like kinase 370 500 - -
Lac4g2950 893 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 660 865 - -
Lac4g2950 893 SUPERFAMILY L domain-like 396 496 - -
Lac4g2950 893 Gene3D Ribonuclease Inhibitor 372 484 IPR032675 -
Lac4g2950 893 Gene3D Transferase(Phosphotransferase) domain 1 660 872 - -
Lac4g2950 893 SMART serkin_6 583 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0797 Lac-Chr11:8449696 Lac4g2950 Lac-Chr4:47831658 1.60E-17 dispersed
Lac4g1999 Lac-Chr4:39483654 Lac4g2950 Lac-Chr4:47831658 7.90E-88 dispersed
Lac4g2948 Lac-Chr4:47815528 Lac4g2950 Lac-Chr4:47831658 0.00E+00 dispersed
Lac4g2950 Lac-Chr4:47831658 Lac4g2954 Lac-Chr4:47858400 7.40E-265 dispersed
Lac4g2949 Lac-Chr4:47826956 Lac4g2950 Lac-Chr4:47831658 0.00E+00 tandem
Lac4g2950 Lac-Chr4:47831658 Lac4g2951 Lac-Chr4:47838812 5.90E-230 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86170 PF12819 Malectin_like 9.40E-110 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2950 - - - 0.0