Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2951 ATGTGGTCTAACTCTTCTACTTCTTGTTCAAGCCAGGAGCAGTCAGGCTTCATTAGTTTAGATTGTGGAGCACCAGAGGATACGAGTTACACCGAAACAACGACTAATATTAACTATGTTTCCGATGCACCCTACATAAACAGTGGTGTAAGTGGAAGTGTGGCTTCAATTTATGGAGACACCTACCAAAGGCAAATGAGGAAACTTAGAAGCTTCCCTCAGGGAATCAGAAACTGTTACAATCTTATGGGAGACGCATTAGAATTTAGACCTTTACTCAACATCACTTATCAAACAGCATCAGGATCCTTAGCACTGAATTTTCGATTGGACATCGGTTCAACAGACAATCGAACATACAGATTCCCTTCCGATGTTTATGATCGCATCTGGTCACCATTTAACTTCAATGAGTGGACACAAGTGAGCACCAATCAAACTGTGGATGCTACTGAACACAACAATCACCAACCGCCATCCGTTGTCATGAAAACTGCTTCCACCCCAATAAATGCAAGCAAGCCACTGGATATTTGGTGGGATACAGTCGATTCATCTCAATATTATGTATTTATCCACGTTGCTGAAGTTGTAGAGCTTCGAGCCAACCAGAGTAGAGGATTCAATATCATGCACAATGGGAAGCTTTTTTATGGACCTTGGATGCAATTACCAAGATCAAGTCAACCTATGGGTAAAGAGGGATTGGGAGGAGATCCATGTGTGCCAATGGGATATCCCTGGAGTGGATTAAATTGTAGCAATGAAGTTGCACCACGAATTATATCCTTGAACCTATCTGCAAGTGGACTGAACGGAGAAATATCTTCTTACATATCCAGTCTAACAATGTTGCAAACTTTGGACTTGTCAAACAATAATTTGACAGGGAAAGTGCCCAATTTCCTGTCTAATCTGTCACACCTCAAAGTCCTGAACCTAGGTAACAACAAGCTCTCGGGTCCAATTCCGGCTGATCTTTTGAAAAGATCCAATGACGGCTCACTATCATTAAGTGTGGGAGGTAACCAAAATCTCGATGGATGTGCATCAGATCCATGTCCAAAGAATGAAGAGAAGAACAGCATCATCATTCCAGTTGCAGCATCAATTGGTGGATTCCTAGTTCTCCTCACAATTGCTGCAATAACCTTTTGGATCATCAAATCTCGAAAGGAACAACAAAAAGGTAAAAATGTTGTCTCAGTGGTGGACAAGTCAGAAACCAACAGTCAGTTTGGCACTTCATTGGAGATGAGAAGACAATTTACATACTCTGAGGTGGTGAAAATGACCAACAATTTCAAAAAAGTTCTGGGTAAAGGAGGTTTTGGGGAGGTCTATTATGGTGTCATTGACGACATTCAAGTGGCTGTGAAGATGTTGTCTTTATCATCATCTCAAGGATATCGGCAATTTCAAGCAGAGGTTACCCTTCTTATGAGAGTTCACCATAGAAACTTGACAAGCCTAGTTGGATATTTGAATGAAGGAAACCACATCGGCCTCATTTACGAGTACATGGCCAATGGAGATTTGGCAGAACACCTTTCAGAGAGGAGCGTACGTATCTTAAGTTGGGAAGATAGACTTCGAATAGCAATGGACGCAGCACAAGGACTGGAGTACCTGCACTACGGTTGTAAGCCACCCATAGTCCACAGAGATGTGAAAACAACAAACATCTTGTTGACAGAGAATTTCCAAGGAAAACTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCACTGATGACAAAACCCACATGTCCACGGTGGTTGCTGGCACTCCTGGTTACCTTGATCCAGAGTACTACATATCAAACAGGCTGACAGAGAAAAGCGATGTGTACAGCTTTGGGATTGCTCTATTGGAGATAATCAGTTGCAAACCAGTAATATTAAAAACCGGAGACACACCTCATATAGTTGAAAGGGTTAACGCTTTGGTGGCGCTAGGAGATATTGAGAGTATAGTCGATCCAAGATTACAAGGGCAATATGAAACTAACTCTGTTTGGAAAACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCGAATTCCAGCAGAAGGCCGACGATGAGCGATGTTTTGGCGGAACTCAAAGATTGCTTAGCCACGGAATTGAGTCGAAAGCAAGCGAATCGCTCGCTTGATTCAAGAAATTCCTTTGAAATGAGCTCCCTCTCTGTTGGGATTAGTGCTTCTGATTCTAGTCCCATGGCGAGGTGA 2229 42.66 MWSNSSTSCSSQEQSGFISLDCGAPEDTSYTETTTNINYVSDAPYINSGVSGSVASIYGDTYQRQMRKLRSFPQGIRNCYNLMGDALEFRPLLNITYQTASGSLALNFRLDIGSTDNRTYRFPSDVYDRIWSPFNFNEWTQVSTNQTVDATEHNNHQPPSVVMKTASTPINASKPLDIWWDTVDSSQYYVFIHVAEVVELRANQSRGFNIMHNGKLFYGPWMQLPRSSQPMGKEGLGGDPCVPMGYPWSGLNCSNEVAPRIISLNLSASGLNGEISSYISSLTMLQTLDLSNNNLTGKVPNFLSNLSHLKVLNLGNNKLSGPIPADLLKRSNDGSLSLSVGGNQNLDGCASDPCPKNEEKNSIIIPVAASIGGFLVLLTIAAITFWIIKSRKEQQKGKNVVSVVDKSETNSQFGTSLEMRRQFTYSEVVKMTNNFKKVLGKGGFGEVYYGVIDDIQVAVKMLSLSSSQGYRQFQAEVTLLMRVHHRNLTSLVGYLNEGNHIGLIYEYMANGDLAEHLSERSVRILSWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTENFQGKLADFGLSKSFPTDDKTHMSTVVAGTPGYLDPEYYISNRLTEKSDVYSFGIALLEIISCKPVILKTGDTPHIVERVNALVALGDIESIVDPRLQGQYETNSVWKTVEVAMACVAANSSRRPTMSDVLAELKDCLATELSRKQANRSLDSRNSFEMSSLSVGISASDSSPMAR 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47838812 47842891 + Lag0003071.1 Lac4g2951 606483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2951 742 Pfam Malectin-like domain 86 220 IPR024788 -
Lac4g2951 742 Pfam Malectin-like domain 20 82 IPR024788 -
Lac4g2951 742 SMART serkin_6 433 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2951 742 Pfam Leucine Rich repeats (2 copies) 284 320 IPR025875 -
Lac4g2951 742 Gene3D Ribonuclease Inhibitor 227 339 IPR032675 -
Lac4g2951 742 Gene3D Transferase(Phosphotransferase) domain 1 508 726 - -
Lac4g2951 742 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 508 713 - -
Lac4g2951 742 ProSitePatterns Protein kinases ATP-binding region signature. 439 460 IPR017441 GO:0005524(InterPro)
Lac4g2951 742 ProSiteProfiles Protein kinase domain profile. 433 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2951 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2951 742 FunFam Leucine-rich repeat receptor-like kinase 225 348 - -
Lac4g2951 742 Pfam Protein tyrosine and serine/threonine kinase 435 700 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2951 742 SUPERFAMILY Protein kinase-like (PK-like) 413 700 IPR011009 -
Lac4g2951 742 FunFam Leucine-rich repeat receptor-like protein kinase 406 507 - -
Lac4g2951 742 Gene3D Phosphorylase Kinase; domain 1 420 507 - -
Lac4g2951 742 PANTHER OS07G0107800 PROTEIN-RELATED 86 217 - -
Lac4g2951 742 ProSiteProfiles Leucine-rich repeat profile. 284 307 IPR001611 GO:0005515(InterPro)
Lac4g2951 742 SUPERFAMILY L domain-like 244 331 - -
Lac4g2951 742 PRINTS Leucine-rich repeat signature 306 319 - -
Lac4g2951 742 PRINTS Leucine-rich repeat signature 285 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2951 Lac-Chr4:47838812 Lac4g2954 Lac-Chr4:47858400 2.00E-199 dispersed
Lac4g2950 Lac-Chr4:47831658 Lac4g2951 Lac-Chr4:47838812 5.90E-230 tandem
Lac4g2951 Lac-Chr4:47838812 Lac4g2952 Lac-Chr4:47843719 1.40E-205 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86171 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2951 - - - 0.0