Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2952 ATGGAAATTGCAATATCAAGGTTGTTCTTGTTTAGTTTTGTCACACTCCTAGTTCAAGCTCAAGATCAGTCAGGCTTTCTTAGCTTAGATTGTGGCTTACCAGCAAATTCATCAAGTTACACCGAACCTGGGACAAAAATTAAGTACATATCAGATGCAGGTTATATAAACACCGGCGAAACAAAGAGTATATCATCGAAATACTTATCTATGTATCAACGACAATTATGGTATCTTAGAAGTTTTCCTCAAGAAACCAGGAATTGTTACAATATAAGCGCCATCAGAGACACTAAATATTTGATTCGAGCAACTTTCATATACGGAAATTATGATGGGCTCAATAGTACTCCGCAATTCGATCTATATTTGGGTGATACTCGATGGACAACAGTGGATGGTAGCTTCTACACAGAGATGATGCATATGCCTTCAACAGACAAATTGCAGATCTGTCTTATCAACATTGGCTACGGAACACCATTCATCTCAGCATTAGAGTTTAGACAACTTCCTAATCTCACTTACCCAACTCTATCAAGATCCTTGTACCCTTATTATCGATTGGATATGGGGTCAATAACAAATGAACAATACAGGTTCCCTGATGATGTTTATGATCGAATTTGGGAAGGGTACAATCGTGATGACTATGCACAACTAAATACATTTGATACTGTAGATGCTGATGGTTCTAATATTTACCATCCAGCGGCCATAATCATGGAGACTGCTGCAACTCCAAAAAATGGGACGAAGTACCTTAATTTCTCATGGAACTCAATTAACGAAAGTGATGAATTTTACGTATATATGCACTTTGCTGAACTTGAAAAGCTTCAGAGCAACCAATTCAGAGGATTTAATATCACACACAATGGGAATTATTGGGATGGGCCTATTATTCCTGATTATTTAAGCACAACAACAACTTATTCTATCCAGCCATCTGTACCACCATCATCAAAACATCAATTTTCATTCTTCCCAGTAGAAAATTCAACACTTCCTCCAATCATCAATGGTTTAGAAATTTATCTTGTGGTGGAGATCTCAGAATTAGAATCAAACAAGGGAGATGTGGATGCAATCAGTAATGTTCGGTCAACTTATGGGGTAATCAAAAATTGGGAAGGAGATCCATGTGTGCCAAGTGGATATCCATGGAGTGGTTTGAATTGCAGTTCTGATCCAGTCCCAAGAATCATATCACTGAACTTGTCTTCAAGCGGATTGAAGGGTGAGATCTCTCCATACATAATCCATCTACAAATGTTACAAAAATTGGATTTATCAAACAACTACTTGACTGGAGAAGTACCTGATTTTCTGTCCCAGTTGTTACACCTCCAAATCCTGAACTTAGAGAATAACAATCTCACAGGCTCTCTTCCACCTGAGCTTATCAAAAGAAAGAAGAACGGTTCACTTACACTAAGAGCCATGCACGAAGGAAACACCAGAAAAGAAGAAAGCAGCAACAATATCATTATTCCAGTAGTAGCATCAGTCGGTGGATTGCTCGCCATCCTCATAATTGGGGGGATTATCTATTGGATTTCAAATAAGAAACAAGAAGGTAAAGACATTACTTTGACAGAGAATCAAGTAGAGACTAACACCCATTCAGGCAGTTCCTTGGAGAAAAGGAGACAACAGTTTACTTATGCAGAAGTCGTGGGGATGACCAACAATTTTGAGAGGGTTCTCGGTAAGGGAGGTTTTGGGATTGTTTACTATGGAGTTCTAGATGACACTCAAGTGGCTGTGAAGATGATATCTTCATCGGCAGGACAAGGCTACCATCAGTTTCAGGCAGAGGTTACAATCCTTATGAGAGTTCACCACAGAAACTTAACAAACCTTGTAGGGTATATGAATGATGGAGGTCACCTTGGCCTCATTTATGAGTACATGGCAAAGGGAAATCTTGCAGAGCATCTTTCTGAGAAAAGCTCAAGTATCTTAACTTGGGAAGACAGACTTCGAATTGCAATAGATGCTGCTCAAGGACTGGAGTATCTGCATCATGGTTGTAAGCCACCAATAGTCCACAGAGATGTGAAAACAACAAACATCTTATTGACAGAAAAATTTGATGCTAAACTTTCTGATTTTGGTCTTTCCAAGACCTACCCAACAGATGACAAGTCCTACATGACCACAGTTATTGTTGGCACCCCAGGTTACCTTGATCCAGAGTACTATACATCAAACAGGTTAACTGAGAAAAGCGATGTGTATGGTTTTGGAGTTTCCCTGATGGAAATAATTAGTTGCAGACCAGTAATTTCAAACACCCAAGACCGAGATACGAATTACATAGCCAAATGGGTTCGCACCATGGTTGCCCAAGGAGATATCAAGAATATAGTTGATCCACGATTAAAAGGAGTATATGAAACTAACTCTGTTTGGAAAGCTGTGGAAGTAGCCTTGGCTTGCGTATCAGTAGACTCCAGTGAAAGGCCAACGATGAATCAAGTAGTGATAGAGCTGAAGAATTCTTTGGCCATGGAGTTGAATCAGAGATCGGAAAGCCGTCCACTGGATTCGAAAGACTCCATTGAAATGATGTCCATAACTATGGTTATGAATGCCACTCACTCCAGTCCCATGCCAAGGTGA 2628 39.65 MEIAISRLFLFSFVTLLVQAQDQSGFLSLDCGLPANSSSYTEPGTKIKYISDAGYINTGETKSISSKYLSMYQRQLWYLRSFPQETRNCYNISAIRDTKYLIRATFIYGNYDGLNSTPQFDLYLGDTRWTTVDGSFYTEMMHMPSTDKLQICLINIGYGTPFISALEFRQLPNLTYPTLSRSLYPYYRLDMGSITNEQYRFPDDVYDRIWEGYNRDDYAQLNTFDTVDADGSNIYHPAAIIMETAATPKNGTKYLNFSWNSINESDEFYVYMHFAELEKLQSNQFRGFNITHNGNYWDGPIIPDYLSTTTTYSIQPSVPPSSKHQFSFFPVENSTLPPIINGLEIYLVVEISELESNKGDVDAISNVRSTYGVIKNWEGDPCVPSGYPWSGLNCSSDPVPRIISLNLSSSGLKGEISPYIIHLQMLQKLDLSNNYLTGEVPDFLSQLLHLQILNLENNNLTGSLPPELIKRKKNGSLTLRAMHEGNTRKEESSNNIIIPVVASVGGLLAILIIGGIIYWISNKKQEGKDITLTENQVETNTHSGSSLEKRRQQFTYAEVVGMTNNFERVLGKGGFGIVYYGVLDDTQVAVKMISSSAGQGYHQFQAEVTILMRVHHRNLTNLVGYMNDGGHLGLIYEYMAKGNLAEHLSEKSSSILTWEDRLRIAIDAAQGLEYLHHGCKPPIVHRDVKTTNILLTEKFDAKLSDFGLSKTYPTDDKSYMTTVIVGTPGYLDPEYYTSNRLTEKSDVYGFGVSLMEIISCRPVISNTQDRDTNYIAKWVRTMVAQGDIKNIVDPRLKGVYETNSVWKAVEVALACVSVDSSERPTMNQVVIELKNSLAMELNQRSESRPLDSKDSIEMMSITMVMNATHSSPMPR 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47843719 47847826 + Lag0003072.1 Lac4g2952 606484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2952 875 Gene3D Transferase(Phosphotransferase) domain 1 639 857 - -
Lac4g2952 875 Pfam Leucine Rich Repeat 449 468 IPR001611 GO:0005515(InterPro)
Lac4g2952 875 Pfam Leucine Rich Repeat 426 447 IPR001611 GO:0005515(InterPro)
Lac4g2952 875 SMART serkin_6 564 839 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2952 875 Pfam Protein tyrosine and serine/threonine kinase 566 832 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2952 875 Gene3D Ribonuclease Inhibitor 361 479 IPR032675 -
Lac4g2952 875 FunFam Leucine-rich repeat receptor-like kinase 360 489 - -
Lac4g2952 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2952 875 FunFam Leucine-rich repeat receptor-like protein kinase 540 638 - -
Lac4g2952 875 PANTHER OS07G0107800 PROTEIN-RELATED 17 843 - -
Lac4g2952 875 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 639 846 - -
Lac4g2952 875 SUPERFAMILY Protein kinase-like (PK-like) 545 832 IPR011009 -
Lac4g2952 875 ProSiteProfiles Protein kinase domain profile. 564 838 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2952 875 Gene3D Phosphorylase Kinase; domain 1 545 638 - -
Lac4g2952 875 SUPERFAMILY L domain-like 383 470 - -
Lac4g2952 875 CDD STKc_IRAK 570 835 - -
Lac4g2952 875 ProSitePatterns Protein kinases ATP-binding region signature. 570 591 IPR017441 GO:0005524(InterPro)
Lac4g2952 875 Pfam Malectin-like domain 29 347 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0798 Lac-Chr11:8456726 Lac4g2952 Lac-Chr4:47843719 1.20E-61 dispersed
Lac11g0801 Lac-Chr11:8491529 Lac4g2952 Lac-Chr4:47843719 6.60E-16 dispersed
Lac4g2949 Lac-Chr4:47826956 Lac4g2952 Lac-Chr4:47843719 2.30E-258 dispersed
Lac4g2952 Lac-Chr4:47843719 Lac4g2954 Lac-Chr4:47858400 1.00E-266 dispersed
Lac4g2951 Lac-Chr4:47838812 Lac4g2952 Lac-Chr4:47843719 1.40E-205 tandem
Lac4g2952 Lac-Chr4:47843719 Lac4g2953 Lac-Chr4:47852382 8.30E-253 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86172 PF12819 Malectin_like 1.40E-102 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2952 - - - 0.0