Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2977 ATGGACAGTTTATGGGATGTTGTGGTTGTGACAGCCATTCTTTTGACCACCATTATTCTCTATAGGAACTGCTTTAGACTTCTCAGATCAAAATTCTGCAACCAACTGCCTCTAGGCTCTCTTGGCTGGCCTTTCATTGGTGAGACTATTGAGTTCATCTCCTGTGCTTATTCCGACCGCCCCGAAACCTTCATGGACAAGCGTCGTCGACTGTATGGGAAGGTGTTCAAGTCACATATTTTTGGAAGTCCTACCATTGTTTCTACAGATGCAGAAGTCAGTAAGTTCATTCTGCAGAGTGATGCAAAGGCTTTCGTACCATCTTACCCGAAATCTTTGACAGAATTGATGGGGAAATCTTCCATTCTGCTGATAAACGGGAGCTTGCAGAAGAGAATCCATGGTCTTGTGGGAGCTTTCTTCAAGTCTTCACATCTCAAAGCTCAAATAACCAAGGATATGGAGTGTTATGTCAAACTATCAATGGCAAATTGGACTGAGAACAATCCTATTTACCTTCAAGATGAAACCAAAAATATTTCCTTTCAAGTATTAGTAAAGATATTGATTAGTTTAAATCCTGGTCAAAGGATGGAGTTTCTCAAGCAACAGTTTCAAGAATTCATCGCGGGGCTTATGGCTTTGCCAGTGAACATTCCCGGAAGCAGGCTTTACCGATCGTTGCAGGCAAGTTGGAATATGGTTAAACTAGTAAAGCAGATAATACAAGAAAGAAAAAGCAGTGGAATTTCCCCTGTCCCAAAAGATGTCATGGAAGTTTTGCTCAAAGATGAAAGTGAACACCTAACAGATGATCTAATAGCAGGGAACATGATTGACATGATGATTCCTGGGGAAGATTCAGTGCCAATCTTAATGACTCTTGCAGTAAAATACCTCTCCGATTGCCCAACTGCACTTCATCAGTTAACGGAGGAAAATTTGAAGATGAAAAGACTCAAAGAGCAGCTCGGAGAGCCGTTGCATTGGAGCGATTACTTATCACTGCCATTTACGCAGAGTGTGATCACGGAGACACTAAGGATGGGAAACATCATAATCGGGGTGATGCGGAAGGCCATGAAAGACGTGAAGATAAAAGGATACCTAATACCGAAAGGTTGGTCGGTGCTTACGTACTTTAGATCCGTTCATCTCGACGACAATCACTATGACTGGCCTTACAAATTCAATCCATGGAGGTGGCAAGATAGAGACTTGAGTAGTTGTAACTTCACTCCTTTTGGAGGTGGACAAAGACTATGCCCTGGACTTGACTTGGCCAGGCTTGAAGCTTCCATCTTCCTTCATCACTTTGTCACTCAGTTCAGATGGATTGCTGAGGAAGATAGAATCATAAACTTCCCCACAGTGAGGATGAAGAAGAGGATGCCAGTTTGGGTGAAGAGGAGAAGGGACTCATGA 1425 42.81 MDSLWDVVVVTAILLTTIILYRNCFRLLRSKFCNQLPLGSLGWPFIGETIEFISCAYSDRPETFMDKRRRLYGKVFKSHIFGSPTIVSTDAEVSKFILQSDAKAFVPSYPKSLTELMGKSSILLINGSLQKRIHGLVGAFFKSSHLKAQITKDMECYVKLSMANWTENNPIYLQDETKNISFQVLVKILISLNPGQRMEFLKQQFQEFIAGLMALPVNIPGSRLYRSLQASWNMVKLVKQIIQERKSSGISPVPKDVMEVLLKDESEHLTDDLIAGNMIDMMIPGEDSVPILMTLAVKYLSDCPTALHQLTEENLKMKRLKEQLGEPLHWSDYLSLPFTQSVITETLRMGNIIIGVMRKAMKDVKIKGYLIPKGWSVLTYFRSVHLDDNHYDWPYKFNPWRWQDRDLSSCNFTPFGGGQRLCPGLDLARLEASIFLHHFVTQFRWIAEEDRIINFPTVRMKKRMPVWVKRRRDS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48035012 48038431 - Lag0003097.1 Lac4g2977 606509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2977 474 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 415 424 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac4g2977 474 PRINTS E-class P450 group I signature 412 422 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 PRINTS E-class P450 group I signature 422 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 PRINTS E-class P450 group I signature 340 358 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 CDD CYP90-like 68 466 - -
Lac4g2977 474 PANTHER CYTOCHROME P450 26 35 447 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Lac4g2977 474 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 27 471 - -
Lac4g2977 474 Pfam Cytochrome P450 38 451 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 SUPERFAMILY Cytochrome P450 35 471 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac4g2977 474 Gene3D Cytochrome P450 30 471 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2977 Lac-Chr4:48035012 Lac5g2065 Lac-Chr5:39155217 1.70E-71 dispersed
Lac11g1120 Lac-Chr11:13871492 Lac4g2977 Lac-Chr4:48035012 1.30E-26 transposed
Lac13g1107 Lac-Chr13:9552769 Lac4g2977 Lac-Chr4:48035012 2.50E-102 transposed
Lac1g2963 Lac-Chr1:50416042 Lac4g2977 Lac-Chr4:48035012 6.40E-138 transposed
Lac8g2762 Lac-Chr8:44946909 Lac4g2977 Lac-Chr4:48035012 1.50E-83 transposed
Lac12g2428 Lac-Chr12:41363118 Lac4g2977 Lac-Chr4:48035012 8.20E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2977 K12638 - csv:101217830 835.484