Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2984 ATGGGAACTGCAGAAATTTCCTTTGGAATTCGGACTGTGATGGGGTTTCGATTACTGTTTCTGCTGTTTGGAATTTGCTTTGCTGTTAGCTCTTTCTCTGTCAGTGAAGCTGCAGTTATCCTCCCGGGCGGGCCAAGCGGAGCACGTTTTATACTGACAGACCATGCTGTCTCTCCAACATCTCATGGCTTTGGCAGGAAATACCATGGCAAGTTGGATAATGCAGTTCCTAGCAAACCATTTAAAAGTTCACCTCCTCAGATCCACTCTCATTACAAAGCCGTTCAATCAGACGATTCAAGTAGAGCTCCTAGCATTGCACTTCCACCTACTGCGCCTGCTAAGAAATGGCCGCACAATCATGCATTCTCACCATCAATCTCTTTTCACAAATTTCACCATTCAAGAAGGAGGTTCAGAAACAATGCTCCACGGCCTGCTTATCGGGTATCACCCCCGACTAGCAGCCAGCAAGGCCCTGCTGCTGTCTCTCCAGGTCAGTCACCATTACCATCTGCAGCAAGAGGGAGGTCGCCGGGACCTGCGCCATCACCAACAATTCAACCCAACCACTATTATATGCCCATTCCTGCTCCTACAATTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGCATGCCACCATCCCAAGTTATGATGCTACCACCTCCACCTCCTAATGGGGATTGTGCAATATCATGTACAGAGCCACTGACCTATACACCTCCCGGGACGCCGTGTGGTTGCGTGTGGCCAATTCAAGTCAAAATCAGTCTTGATGTTGCAATATACACATTTTTCCCTCTGGTATCAGAGCTTGCAAAGGAAATTGCAGATAGTGTCGGTCTGAACCATAGCCAAGTTCGAATTATGGGAGCTGATGCTGCTAGTCAGCAGTTAGAGAAAACAACCGTCCTCATCAATTTGGTTCCTAGAGGATCGAAATTCAATCAAACCATAGCCTTTTCGATATATAAGAAATTTTGGCGGAGAAAAATATCCATCAACGCCTCTTTGTTTGGTAGATATCAAGTACTAAATGTCAAATATCCAGGTCTTCCGCCATCTCCTCCTACAGCGCCTTCAGGTACTTCATCCATTAATGATGGTTTGAGCACTAGCAATAATAATGCTGGAAATGCAATAAAACCGTTGGGAGTTGACGTGCCGAGAAGAAGAAAAGAAGGGCTTGGTGGAAACATGATCGCGGTGATTACTATATCATCATTCACTGCCTTGGTCATGTGTGTTGGACTTTCTTGGATTTGCCTGTTGAGATGCAGAGTGTCTGCACATCAACCAGCACAAGTCCCACAAAACTTGATAGCCTCACCTACAAAACCATCAAGCACTGCTGGATTGATAATTGTTGGAAGTGAACCTGGTTCTTCATCAATGCCCCTCGATGCCGATCCTATGACATATATTGGAGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAAGCCACTGACAACTTTGATGCTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCAGTTTAGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTTAAAAGACATAATCAACATGGTATTCGGGAATTCTTGGCAGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTCGTATATGAATTGGTTCCTAATGGAAGCGTCGAATCGCACTTACATGGCATTGACAAGTTAACTGGTCCTCTTGACTGGGATGCCCGAATGAAGATTGCCCTCGGTGCTGCTCGTGGCCTAGCGTATTTGCACGAAGACTCCAATCCCCGAGTCATTCATCGGGACTTTAAAGCTAGCAACATCTTGTTGGAATATGACTTTACGCCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACCCATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACTGGCCATCTTCTTGTAAAGAGTGATGTCTACAGCTATGGCGTTGTTCTTCTTGAGTTACTTACAGGAAGAAAGCCAGTTGACTTGTCGCTTCCACCCGGGCAAGAAAATCTCGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAGGGTTTAGATGCCATAACAGACCCTGCTATTAAGTCTGATATCTCCATTGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCTATGTGTGTGCAACCCGAAGTCTCTCACAGACCATTTATGGGCGAGGTTGTTCAAGCACTAAAGCTTGTTTGCAATGAGTTTGAAGAGACTAATGAGCCAGGTTCGCGAAGTTACAGCCGAGATGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCAGGTGAAATGCTGAACACTGCCGAGACCTCGCACACATTTCCTTCAAGAAGGGAGACGAGCGTAGGATTATCGGCATCGGATTTGATCAGCGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCGAGATGGCATTCGTCAAACTCAGAACCGTTGCGAACAGGAAGAAAAAAGCAGTTCTGGCAGAAGCTAAGAAGTTTGTCACGAGGCAGCATCAGTGAACATGGCTTTTCTTCAAAGTTTTGGCCTGGATTTCATTAG 2670 45.24 MGTAEISFGIRTVMGFRLLFLLFGICFAVSSFSVSEAAVILPGGPSGARFILTDHAVSPTSHGFGRKYHGKLDNAVPSKPFKSSPPQIHSHYKAVQSDDSSRAPSIALPPTAPAKKWPHNHAFSPSISFHKFHHSRRRFRNNAPRPAYRVSPPTSSQQGPAAVSPGQSPLPSAARGRSPGPAPSPTIQPNHYYMPIPAPTISPMGSYKKKKSMPPSQVMMLPPPPPNGDCAISCTEPLTYTPPGTPCGCVWPIQVKISLDVAIYTFFPLVSELAKEIADSVGLNHSQVRIMGADAASQQLEKTTVLINLVPRGSKFNQTIAFSIYKKFWRRKISINASLFGRYQVLNVKYPGLPPSPPTAPSGTSSINDGLSTSNNNAGNAIKPLGVDVPRRRKEGLGGNMIAVITISSFTALVMCVGLSWICLLRCRVSAHQPAQVPQNLIASPTKPSSTAGLIIVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKATDNFDAARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEPGSRSYSRDELLSYMDSKFGGISGEMLNTAETSHTFPSRRETSVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKQFWQKLRSLSRGSISEHGFSSKFWPGFH 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48097144 48101498 - Lag0003104.1 Lac4g2984 606516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2984 889 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524(InterPro)
Lac4g2984 889 MobiDBLite consensus disorder prediction 80 104 - -
Lac4g2984 889 MobiDBLite consensus disorder prediction 143 193 - -
Lac4g2984 889 Pfam Protein tyrosine and serine/threonine kinase 497 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2984 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2984 889 FunFam receptor-like serine/threonine-protein kinase ALE2 468 569 - -
Lac4g2984 889 CDD STKc_IRAK 500 768 - -
Lac4g2984 889 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Lac4g2984 889 PANTHER OS01G0750732 PROTEIN 231 793 IPR050885 -
Lac4g2984 889 MobiDBLite consensus disorder prediction 148 165 - -
Lac4g2984 889 MobiDBLite consensus disorder prediction 354 375 - -
Lac4g2984 889 FunFam Receptor-like serine/threonine-protein kinase ALE2 570 787 - -
Lac4g2984 889 Gene3D Phosphorylase Kinase; domain 1 465 569 - -
Lac4g2984 889 ProSiteProfiles Protein kinase domain profile. 494 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2984 889 MobiDBLite consensus disorder prediction 176 192 - -
Lac4g2984 889 Gene3D Transferase(Phosphotransferase) domain 1 570 788 - -
Lac4g2984 889 MobiDBLite consensus disorder prediction 79 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2562 Lac-Chr11:41686795 Lac4g2984 Lac-Chr4:48097144 4.90E-172 dispersed
Lac12g1428 Lac-Chr12:24698012 Lac4g2984 Lac-Chr4:48097144 1.40E-38 dispersed
Lac3g2607 Lac-Chr3:39996838 Lac4g2984 Lac-Chr4:48097144 1.50E-82 dispersed
Lac4g2984 Lac-Chr4:48097144 Lac7g0849 Lac-Chr7:6877120 2.60E-84 dispersed
Lac11g0417 Lac-Chr11:4249214 Lac4g2984 Lac-Chr4:48097144 2.00E-105 transposed
Lac3g1027 Lac-Chr3:8360370 Lac4g2984 Lac-Chr4:48097144 1.20E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86177 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2984 - - - 0.0