Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g2988 | ATGACCTCCATCCACCACCACCACCACCACCACCTCTCCAAGTCCACCGCCGTCTCTACCACCTCCACCTCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGCTCCCGACTGCATCCTCGCCCCCTACTTCCCCCACGATCGCCAGCGCCAATTCCTCAACGCTCACAAGCTCTTCGGCGTCAGCAACATCACCAAGATCATCAAGAATCTCGATCCCTTCGAGAAAGAAGAGGCCATGCGCACCATCATTTTCCAGTCCGACGTCCGCTCCATCGATCCCGTCGGCGGATGCTACCGGATTATTCGAGACCTCCAGCGCCAGATTGAGTACAGCAAGGCCGAACTCGACCTCGTGCTCCATCAATTGGCCATCTGTAAGCAGCAGGCCGCCGCGGCTGCTGCGGCGGCGGCCGCGATTCTGGAGGCGGATCCGATGAGTGGATACGGCGGGATGGAGCAGCAATTTGTGGAGGGATATGAAGGGGAAGGGTTCGTGGTCGGGGAAAATGAGAATCGGGAGAGTTTGGAAGAGGAAGTGGAGGTTTGGGGGATTCAGGATTCGGGAATTTCTTCGTCGTCTTCGTTGCAATTGAAACAGGGCGGCGGCTCTGTTAATGATTTTGATGATATCAAGATCCATAATTCTCATCATCAACATCAACACCTTCTTAAGTTTCAACACCATGATCATCAATTGCTTCATCACAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTGAAAGAAGACTCTGACCCAATACAACAGACTCAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTTGACACTTTATTTACCTTCCCAACTTGTGATACTTAG | 861 | 52.85 | MTSIHHHHHHHLSKSTAVSTTSTSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSIDPVGGCYRIIRDLQRQIEYSKAELDLVLHQLAICKQQAAAAAAAAAAILEADPMSGYGGMEQQFVEGYEGEGFVVGENENRESLEEEVEVWGIQDSGISSSSSLQLKQGGGSVNDFDDIKIHNSHHQHQHLLKFQHHDHQLLHHSEEAMLKMDNVMLKEDSDPIQQTQAQDQELKGAVDTLFTFPTCDT | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 48119216 | 48121272 | - | Lag0003108.1 | Lac4g2988 | 606520 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g2988 | 286 | ProSiteProfiles | LOB domain profile. | 27 | 128 | IPR004883 | - | |
| Lac4g2988 | 286 | Pfam | Lateral organ boundaries (LOB) domain | 28 | 123 | IPR004883 | - | |
| Lac4g2988 | 286 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 26 | 236 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2988 | Lac-Chr4:48119216 | Lac6g2155 | Lac-Chr6:37715647 | 6.30E-24 | dispersed | |
| Lac8g1242 | Lac-Chr8:26839646 | Lac4g2988 | Lac-Chr4:48119216 | 3.50E-41 | transposed | |
| Lac8g2657 | Lac-Chr8:44043777 | Lac4g2988 | Lac-Chr4:48119216 | 2.30E-27 | transposed | |
| Lac9g1644 | Lac-Chr9:35767841 | Lac4g2988 | Lac-Chr4:48119216 | 1.70E-12 | transposed | |
| Lac9g2015 | Lac-Chr9:39749012 | Lac4g2988 | Lac-Chr4:48119216 | 3.60E-19 | transposed | |
| Lac4g2988 | Lac-Chr4:48119216 | Lac6g0186 | Lac-Chr6:1461395 | 5.70E-25 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23787 | PF03195 | LOB | 1.40E-35 | No_clan | Lac | TF |
Pathway information