Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2989 ATGATGATGAAAGCTAATTTTTTGTCTCAACAACAACAACAACAAGTAGTCATGGAGGAAAATTTGTCCAATTTGACTTCTGCTTCTGGTGAAGCCACTGCTAGTGTTTCTTCTGCCAATAAAAATGAGTTCCCCAATCAATATTTTGCTCCTCAAACCCAACAACCGCCCCCTCCGAAGAAGAAGCGGAACCTCCCAGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACGAATCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTACAGCTGCATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAGAGATCAAACAAAGAGGTGATAAAGAAGAAGGTATATGTTTGTCCAGAGCCAAGCTGTGTCCACCATGATCCATCAAGAGCTCTTGGAGACCTCACAGGAATCAAGAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACAAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTCCTCTCTTCTTACAACAACAACAATTCACAAGAATTCTCGAATAATAACAACAACAACAACAATATTTTTGCTCTGAAACGAGACTTCAACAGCAGCAACAGCAACAACAATAATAACATGAGATCGACGGAAATCCCGCCGTGGCTGCAGCCTTCTGATCTCCGAGGGGAAATCTTCATCGGGAGCGGCCACGACCAGCATCATCATCATCATCATCAAACCCTAAACCCTAACCCTAACCCTAGCGGAGTCGGGTGTGGGCCCAGTAATGTTGCAGCTCCTCCATATCAATCCTCTTCTCTTTCATCTCCTCATATTTCAGCCACTGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTGGTTCACGTGTCTACAGGTAATTTTGGGCAGATGGGTTTATGCTCACGTGAAGGTGAAATGGGAACAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGATTATAGGAATAAAGCTGCAGCTGCTTCTGCTTCTGCTTCTGCTACTGCTTCTGCTTCTGCTTCTGCACCCAACACATTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCTGCTTCTCATCCCTTCCTCCAAGATTCCTCCTTCGACAACGACGCCGCCGCCTTCGCCGCTATGCATCATCACACCGCCACCGTCCCCGTCCCCGCCGCCAACGTCGCTGCTTCGGGCAGTCGAAACGACGGTTTGACGAGAGATTTCTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCATTGCTGGTTTTGGAAATTGCATTGTTCCCAATTCGTCCAATCTTCAGAGCCAAATTCAGAAGCCATGGCAGGGTTAG 1593 47.27 MMMKANFLSQQQQQQVVMEENLSNLTSASGEATASVSSANKNEFPNQYFAPQTQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNSQEFSNNNNNNNNIFALKRDFNSSNSNNNNNMRSTEIPPWLQPSDLRGEIFIGSGHDQHHHHHHQTLNPNPNPSGVGCGPSNVAAPPYQSSSLSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLVHVSTGNFGQMGLCSREGEMGTGGGAVSCSSSSCTDYRNKAAAASASASATASASASAPNTFLHDMINSLSSASASHPFLQDSSFDNDAAAFAAMHHHTATVPVPAANVAASGSRNDGLTRDFLGLRPLSHGDILSIAGFGNCIVPNSSNLQSQIQKPWQG 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48131014 48134002 - Lag0003109.1 Lac4g2989 606521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2989 530 Gene3D Classic Zinc Finger 144 223 - -
Lac4g2989 530 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Lac4g2989 530 Gene3D Classic Zinc Finger 68 137 - -
Lac4g2989 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 497 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac4g2989 530 MobiDBLite consensus disorder prediction 25 50 - -
Lac4g2989 530 MobiDBLite consensus disorder prediction 292 333 - -
Lac4g2989 530 SMART c2h2final6 166 186 IPR013087 -
Lac4g2989 530 SMART c2h2final6 89 111 IPR013087 -
Lac4g2989 530 SMART c2h2final6 131 161 IPR013087 -
Lac4g2989 530 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Lac4g2989 530 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Lac4g2989 530 MobiDBLite consensus disorder prediction 258 279 - -
Lac4g2989 530 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Lac4g2989 530 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Lac4g2989 530 FunFam protein indeterminate-domain 12-like 68 137 - -
Lac4g2989 530 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Lac4g2989 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Lac4g2989 530 MobiDBLite consensus disorder prediction 258 277 - -
Lac4g2989 530 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lac4g2989 530 MobiDBLite consensus disorder prediction 25 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2236 Lac-Chr4:42057027 Lac4g2989 Lac-Chr4:48131014 3.50E-86 dispersed
Lac4g2989 Lac-Chr4:48131014 Lac9g2004 Lac-Chr9:39675566 9.00E-85 dispersed
Lac12g2443 Lac-Chr12:41534019 Lac4g2989 Lac-Chr4:48131014 8.70E-104 wgd
Lac2g0460 Lac-Chr2:3376502 Lac4g2989 Lac-Chr4:48131014 5.70E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23788 PF00096 zf-C2H2 0.0054 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2989 K25870 - csv:101220200 694.886