Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2994 ATGCCTTCCAAGTTGAAAATCGAGTCGATAAGACGGGGAAGAATAAGGGAGAGGATCCGTCGAAGCCATCTCTATACATTTGCTTGCCTCCGGGCGAACAGTGTAGCACGGGAGGTTGACGATTCGAATCCTTTGACAGGACCTGGTTTCTCACGAGTTGTCTGTTGTAACCAACCTCATCTCCATGACAGGAAGCCAATGAGATACTGCTCCAATTACATATCCACGACAAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCAGGAGGGTTGCCAATTTGTACTTTCTTTTGGCTGCATTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCCGTGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGGCTTAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTATGCAGGATATGAAGGTTAATCTCAGGAAAGTGAGTGTCCACAAAGGGGATGGTGCTTTTGGTTATAAACCTTGGAACCAGATTCGAGTTGGGGATATAGTGAAAGTCGAGAAAGATCAGTTCTTTCCAGCCGATTTGCTTCTCTTGTCATCATGCTATGAGGATGGTATATGTTATGTGGAAACGATGAATTTGGATGGTGAGACCAATCTCAAAGTAAAGAGAGCTTTGGAAGTAACTTTACCCTTGGATGACGATGCTGCTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCAAACCCGAATCTTTACACCTTTGTCGGTAACCTTGAGTATGATCGCCAGATTTATCCTCTTGATCCTAGTCAGATTCTCCTCAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGCGTTGCGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCTCCTTCAAAAAGAAGTAGAGTAGAGAGAAAAATGGACAAAATTATTTACATCCTCTTTACTCTCCTTGTATTGATCTCGTCAATCAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACGAAATGACAGACTGGTGGTATTTACAAACTTCTTTTGATGATGATCCACTGTACAATCCTCGTCAGCCAACCTTATCAGGTCTCATACATTTGGTCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCATTATATGTTTCCATCGAGGTTGTCAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTAGCAATCCAGCTCGAGCTCGAACTTCGAATTTGAACGAGGAGTTGGGCCAGGTAGACACGATCCTATCTGACAAAACTGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAGTGTTCCATTGCTGGCACTGCATATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCGTATGACCTTGAGGAGCAGGATGAAGAATATACTGATGTTCCTGTGCAAAAAAATAGCCGACTGCCCTCCATGCCAAATTCCAGAAGCGGTTCAGAGATCGAATTGGAGACTGTTGTTACTTCAAGTGATGCCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTTGAGGACGGCCGCCTAACAGGTGGAAACTGGTTGAATGAGCCCAATCCTGATGTTCTTCTGTTATTCTTCAGAATTTTAGGAATTTGTCACACTGCAATTCCTGAGCTGAATGAGGAGACTGGTGTTTATACATATGAGGCCGAGTCCCCCGATGAAGGTGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAATCAACGTTGGTTGTCCGTGAAAGATATCCTTCACCTGATCAAATAATTGAAAGGGAATACAAAATTTTGAACCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTGTTAGGGACGAGCAAGGCCAGATTATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTAGCAAAGAACGGAAGAACATATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGTACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGGCCGAATATAATGCTTGGAACAGTGAGTTTCAGAAGGCTAAGACGTCCATTGGCGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGACCTCATGGAGCGAGAACTAACCCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAAACTCAGATAACTTAGCACCGGATGGCAAAGAGGCCATGAAAGAATATATTTTGAATCAAATCACCAACGCTTCACAAATGATCAAGCTGGAGAAGGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTCGAAGATGATATGAAGCTTCAATTCCTCGGACTTGCTGTTGATTGTGCATCGGTCATTTGCTGTCGTGTCTCTCCAAAGCAGAAGGCCTTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCAATTGGTGATGGTGCGAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTTGGTATAAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTTCATGGTCATTGGTGCTACAAGAGGATAGCACAAATGATTTGCTACTTCTTCTACAAGAATATTGCATTCGGATTAACGCTGTTCTACTTTGAAGCATACGCGGGATTTTCTGGGCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCAATGCCTGTAATTTCCCTTGGGGTTTTTGAGCAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTGTATCAGCAAGGACCCCGAAACTTGTTCTTCGACTGGCCTCGGATTTTTGGATGGGTGGGGAACGCTCTCTACTCCTCTCTAGTCACTTTCTTCCTCAACCTCATCATCTTCTACGAACAGGCATTCCGCTCGGGCGGCCAAACTGCCGATATGACTGCTGTAGGAACGACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCCCTCACAATGAGCCATTTCACCTGGATCCAACACGTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGATAATATCCTCTGGGAATGCATATAAAATCTTTATTGAAGCACTAGGCCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCAGATAATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGACTCAAGCATGTGGACCAGGGAAAGGTCAAAGGCAAGGCAAAAGACCAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATAAGGCAGTTAAAAGGAAAGCTGCAAAAGAAGCACTCTTCCCTGGGAGCATCTCCAAATTCTGCTATATCCTGA 3714 42.97 MPSKLKIESIRRGRIRERIRRSHLYTFACLRANSVAREVDDSNPLTGPGFSRVVCCNQPHLHDRKPMRYCSNYISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAVSMIAPLVFVVGLSMAKEALEDWRRFMQDMKVNLRKVSVHKGDGAFGYKPWNQIRVGDIVKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDAAFKDFTGKIYCEDPNPNLYTFVGNLEYDRQIYPLDPSQILLRDSKLRNTAYAYGVAIFTGHDSKVMQNATKSPSKRSRVERKMDKIIYILFTLLVLISSISSIGFAVKTKYEMTDWWYLQTSFDDDPLYNPRQPTLSGLIHLVTALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETSNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAARQMAYDLEEQDEEYTDVPVQKNSRLPSMPNSRSGSEIELETVVTSSDAKDQKSAIKYFSFEDGRLTGGNWLNEPNPDVLLLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQIIEREYKILNLLDFTSKRKRMSVIVRDEQGQIILLCKGADSIIFDRLAKNGRTYEEATTRHLNEYGEAGLRTLALAYRKLEEAEYNAWNSEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTNSDNLAPDGKEAMKEYILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSMPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWVGNALYSSLVTFFLNLIIFYEQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHVLVWGSIAMWYLFILLYGMIISSGNAYKIFIEALGPAPVYWIATILVTITCNLPYLAHISFQRSFHPMDHQIIQEIKYYRKDVEDSSMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGASPNSAIS 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48177880 48182606 + Lag0003114.1 Lac4g2994 606526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2994 1237 Pfam Phospholipid-translocating ATPase N-terminal 56 121 IPR032631 -
Lac4g2994 1237 SFLD p-type atpase 419 944 IPR044492 -
Lac4g2994 1237 NCBIfam HAD-IC family P-type ATPase 865 974 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac4g2994 1237 FunFam Phospholipid-transporting ATPase 130 300 - -
Lac4g2994 1237 FunFam Phospholipid-transporting ATPase 737 933 - -
Lac4g2994 1237 SUPERFAMILY HAD-like 423 937 IPR036412 -
Lac4g2994 1237 Gene3D - 736 933 IPR023214 -
Lac4g2994 1237 MobiDBLite consensus disorder prediction 491 507 - -
Lac4g2994 1237 MobiDBLite consensus disorder prediction 482 507 - -
Lac4g2994 1237 Pfam Phospholipid-translocating P-type ATPase C-terminal 921 1169 IPR032630 -
Lac4g2994 1237 CDD P-type_ATPase_APLT_Dnf-like 71 1052 - -
Lac4g2994 1237 Gene3D - 445 469 IPR023299 GO:0000166(InterPro)
Lac4g2994 1237 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Lac4g2994 1237 PRINTS P-type cation-transporting ATPase superfamily signature 893 912 - -
Lac4g2994 1237 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Lac4g2994 1237 FunFam Phospholipid-transporting ATPase 604 735 - -
Lac4g2994 1237 Gene3D - 603 735 IPR023299 GO:0000166(InterPro)
Lac4g2994 1237 Coils Coil 461 481 - -
Lac4g2994 1237 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 48 1183 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac4g2994 1237 MobiDBLite consensus disorder prediction 1217 1237 - -
Lac4g2994 1237 SUPERFAMILY Calcium ATPase, transduction domain A 159 299 IPR008250 -
Lac4g2994 1237 Gene3D - 130 301 - -
Lac4g2994 1237 NCBIfam phospholipid-translocating P-type ATPase 69 1177 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac4g2994 1237 SFLD C1.7: P-type atpase like 419 944 - -
Lac4g2994 1237 Gene3D - 432 444 IPR023214 -
Lac4g2994 1237 SUPERFAMILY Calcium ATPase, transmembrane domain M 67 1165 IPR023298 -
Lac4g2994 1237 Pfam Cation transport ATPase (P-type) 559 663 - -
Lac4g2994 1237 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 536 700 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2994 Lac-Chr4:48177880 Lac8g1167 Lac-Chr8:24782303 0.00E+00 dispersed
Lac4g2994 Lac-Chr4:48177880 Lac13g0439 Lac-Chr13:3104800 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2994 K01530 - csv:101221220 2279.21