Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2996 ATGGCGGACCATTCTTCCAATCGCGATACCGATTCAGGCTTTGATCATGGCTCATCCCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGAAACTTCCAGCTTCCAACCTCCCCCGAGTTTCTCTTCGACGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACCGGTTGCGGTTACCTCGCTGGTGCAGTCGGCGGCGCGTCTACGGGCTTCGTGTCCGGCGTCAAATCTTTCGAATCAGGCGATACCATGAAACTCCGGATCAATCGGATCCTAAACTCTTCTGGTCATTCAGGGCGTCTCTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTATATGCTGGTTTGGAAAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTAGCAGCGGGACTTGGCACCGGTGCGCTTTATCGTGCGGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGCGCTATTGGCGGCGTTGTGGTTGGAGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGCAATTGTTTGATCAATGACGAGGTAAAGGGGTCCGTTTCCGGTGTAACCATGAAATCTTTACTGGGAATTTGGGGCAATGGAAACAAATTTGGCAACCTCAATCTACATCGGTTTTGGATTCTCAATGTCCTTCGAACGCTTTCGGCCATCAGAGAGCCAAATGCCTCCAAAATGGTAAGGCAGCTGCTCGGCTTCGTCAACCTGAAAAATTTACCAGAGAAAACTTCTTTATGCTGCGCTTTGTCCAATACTCGTCTCCAACTCCACGGATCAGATCCGAGGAGTTTGGCAAACCCTAGCCTGCTTTCTTCAATCTCTCTGTTCCATCTTCCCATGGCAGGTTTGGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATATGATCTTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCAATGGGCCTGCAAGAGAACCTTCTCAGAGGCATTTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCTACCTTCTGCTCTGGGATACTGCAGCAACTTGACTATGGTCTAGTCCAGTGCCAGGCTTTAGTTCTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCCTGTGTGGGAGGGACGAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATTTACGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTCTTCTCAGCCACGATGCCTCCCGAAGCTCTGGAAATCACTAGGAAGTTCATGAACAAGCCAGTTAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTTGATAAGGAAGATTGGAAGCTTGAAACTCTGTGCGATCTCTATGAGACTCTAGCCATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCTGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGCGAGTTTCGATCTGGCTCTTCTCGTGTTCTTATCACGACTGATTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCAGAAAATTACCTTCATCGTATTGGTCGAAGTGGGCGTTTTGGAAGAAAAGGTGTCGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAGGAGCTGCCAGCTAATGTTGCTGATCTCCTATGA 2133 47.3 MADHSSNRDTDSGFDHGSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGFVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRNCLINDEVKGSVSGVTMKSLLGIWGNGNKFGNLNLHRFWILNVLRTLSAIREPNASKMVRQLLGFVNLKNLPEKTSLCCALSNTRLQLHGSDPRSLANPSLLSSISLFHLPMAGLAPEGTQFDSRQYDLKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48187090 48193493 - Lag0003116.1 Lac4g2996 606528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2996 710 SMART ultradead3 356 553 IPR014001 -
Lac4g2996 710 FunFam Eukaryotic initiation factor 4A-II 325 544 - -
Lac4g2996 710 CDD DEADc_EIF4A 342 539 - -
Lac4g2996 710 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 337 365 IPR014014 GO:0003724(InterPro)
Lac4g2996 710 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 334 696 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Lac4g2996 710 CDD SF2_C_DEAD 550 680 - -
Lac4g2996 710 SMART helicmild6 590 671 IPR001650 -
Lac4g2996 710 FunFam Eukaryotic initiation factor 4A-III 545 710 - -
Lac4g2996 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 368 538 IPR014001 -
Lac4g2996 710 Pfam Tim17/Tim22/Tim23/Pmp24 family 63 173 - -
Lac4g2996 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 549 710 IPR001650 -
Lac4g2996 710 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 484 492 IPR000629 -
Lac4g2996 710 Gene3D - 546 710 IPR027417 -
Lac4g2996 710 MobiDBLite consensus disorder prediction 1 25 - -
Lac4g2996 710 Gene3D - 327 545 IPR027417 -
Lac4g2996 710 Pfam DEAD/DEAH box helicase 362 524 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lac4g2996 710 Pfam Helicase conserved C-terminal domain 563 671 IPR001650 -
Lac4g2996 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 691 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2996 Lac-Chr4:48187090 Lac7g0249 Lac-Chr7:1954560 7.40E-74 dispersed
Lac11g0455 Lac-Chr11:4759330 Lac4g2996 Lac-Chr4:48187090 6.90E-141 transposed
Lac3g2041 Lac-Chr3:24244592 Lac4g2996 Lac-Chr4:48187090 2.10E-49 transposed
Lac6g0640 Lac-Chr6:5427233 Lac4g2996 Lac-Chr4:48187090 1.70E-62 transposed
Lac12g2459 Lac-Chr12:41655823 Lac4g2996 Lac-Chr4:48187090 7.00E-234 wgd
Lac4g2996 Lac-Chr4:48187090 Lac6g0175 Lac-Chr6:1412049 8.90E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2996 K03257 - csv:101221456 813.527