Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2997 ATGGCAGCTCCTACGGCTGAAGAAGAAGCTAACGATTCCTTTACCACCACCAACACGGTGATCGCCATTAACAGGGACAAGAACAGTCAATACGCGGTGAAATGGGCTGTGGAACATCTGTTCAACCGGAAGAACGCCGGCGATTGTATCCTCATCCATGTTCGGAGCCAGAGCTTGCATCCCCAGGATGCCGAAACGGTTCCTAAGGAGTATCGTCCACCGACTGAAGCCGAGTTGCATCAGTTCTTTCTTCCCTACCGAGGATTCTGTGCGCGAAAAGGAATAGTTGCTAAGGAGATTATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACACCCCATTAGCAATATTGTTGTGGGTGCTTCCCACCGGAATGCTATTATGAGGAAGTTCAAACACCCAGATGTTGCGACGTGCCTACTCAAAACAACTCCAGAATCATGTTCTGTATATGTCATAGCTAGAGGCAAAGTTCATACTAAGAGATTGAGAAAGCGACAAAAGTCACAAACTGATGGGACAGAAACACCATCTGGAACTCCACACATTGACAGGTCTCTATCAAAAATACAAAAACCAGCATATTCTAATATCTCAGGATTCTCCGAGGATAAAGACAGGCATGTTTCTGCCATCAGTAATGATTCACTGTCAGGCAGTAGTGACTTTTCGGGGCCTTTCAGTTTCAAATCAATTGAAACATCCTCTGAGAACTTAGATTTTTCCTTAAACTCCTCAGAGACTAATTCGAAGAGCTTTGTTACCTCTAACACTACATCTCCCATAGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTGCAAGGAAGCTCTAGTAGCAAAACAAAAGGCAAAAGAACTTGAACAACTGAAGATGGAAGAAGAGAAGAAGTTAGAACAAGGTAGATCTGCAGAAGCGGCCCTAACAGCATTGGCAGAGTTTGAGAAGCAGAAGAGCAAGGCTGCGACAGAAGCAGCTCTAATGGCACAAAGGCTGGCAGAATTAGAGACCCAGAAAAAACGAAATATTGCTGAAAAGAAGGCTCGGGTGGAGGCAGAGGAGAAACAGAAAACACTTGATTTATTTGAACGCAATAATATCTGCTATAGACGATACAGCATTAACGAGATCGAAGCTGCAACAGATCATTTTAACGAGTCAAACAAGATTGGTGAAGGTGGATATGGTCCTGTTTACCAAGCCTTACTCGATCATACTTCTGTTGCCATTAAGATCTTGAGACCAGATAGATCTCATGGGCAAAGACAATTCCAGCAAGAGATTGAAGTTTTAAGCCGCATGAGGCATCCACACATGGTTCTCCTCTTAGGTGCTTGCCCAGAATATGGTTGCCTTGTTTATGAATATATGGAAAACGGGAGCTTAGAAGACCGTCTTTTCAGGAAAGACAACACTCCTCCGATCCCTTGGAAAACCCGTTTCAGGATAGCTTCTGACATTGGCACTGCCCTTCTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTGGATCACAACTACGTGAGCAAAATAGGTGACGTGGGTCTGGCAAGGCTAGTTCCACCATCGGTTTCCGATAGTGTCACTCAATATCACATGACAGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATACCAACAAACAGGAATGTTGGGTGTGAAATCAGATATTTACTCCTTTGGTGTTCTGCTACTCCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACACGGCACATTTCCACAGATACTCGATCCTACAATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTTGGTACAGTTCTATTGCCAGAACTGGTCAGGCTAAAAAATCTGGGAATGAGCGAAACACCCCCGAAGGGAACACTCTCAAACATCGGCATAGCACCTGATCAACGGGCTTATAACTCAGCTCCAACTCTGAAGGCATCAAAAGATGAGATAAAGAAAAAATGGACATCGAAGGACAGTGATGCAAAAAAAGTCTTAACTATACCACTGAACGGAAAACAAGTTGATGAAATAAGGAAGAGGCAGCAAAGCTCTGTACGCTGTTGGTCATTTGCAATTTTGGACCACCCCGATATACAAGGAGCTGATGAGGACAACCGGGGAGAAATCGGGCTGAAAGATGGACCAAGGAGGCAAAACCGGCAAATGGGACGGGCCAAGACTGAAGGGGTCGGGTTTTCGGCCCGACCCCCTACTCGGCCTCGGCCATGGGCCGAGGCTGACCCTCGGCTCGCTCGTGCGGGCCGAGCCCGTTTGGTCCCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTCAGGTGAGATCCTCTGGCCAAAATCGACCATCAACAGTTGGCGCCGTCTGTGGGGAAGAAAGCTTGCTAATCTGCACATCGGTTATTCCATGAGTAAGGGTATGGAAAAGAAAGACCAAGACGTAAACATAGAGAATTCGGATGGCGACCGCCACCAGCGGAGGTCACGTGACGATGACAGCATCCGGGGGTCACCGAGACCAGCAGGCCGAGGCCGAGCAGAGGATGCCGACACCAAGATTGCCGCCCTTGAGGATGGGGTGAAGGGAATGAATCAGAGTTTATCCAGAATACTCCAAATCCTGGGTAAACCCGGCCCTAGCACCAAAGTCCATGAGGGGAGCTTGATTAGAGACCCGAGGAAGGGGAAGGAGCCTATGGAGCACACTGCAGAGTCAGGGACGAGGTCAAAGGGAAAGAAGACTGACAGCATGACCAGCAAGTTCAGGGGGCTCAAACCCACTGATCGCACGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGGCGTCACTACACAGTTTCTACCCCAAGCTACGGTCATACTAAGACAGACCTGAGGAATCTGATCGTTGAGAAGCGCAGAAGTGCCAAAACTGCCGAGTCCGAGGCCAAAGCCGCCGAAGCTGAAGCCCGGGCTGCCGAGGCCGAGGCCAGAGTAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAAGACGACCTCCCTTGGAAGACCGAGCTTCTAAATGCACTAAAGGAGCTCGGAAATCCTCAGGGAGACCAGCAGAGGTCAAAGAACTTTGGAGATCAAAACTTGGAGGAATTAGCCGACCAAGTCGATCCGCCCTTCACAGAGGAAGTCATGAAAGCCGAGGTGCCTCAAAAGTTTAAGGTACCCACGTTCAAACAGTACGATGGCAAGAAAGACCCCGTGCAACATCTAAATGCATACAGAAGTTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGTCGTGCATTCTTTTTCACCCTGACAGGATCAGCTAGGCACTGGTTTGAGAGACTGAAAAGAAGATCCATCAGCTGTTTCAAAGAGTTAGCCCAAGCATTCCTTGCACAGTTCATGGGAGCTAGAGAGCAGCGCAAGCCTCACATCAACCTCTTGACGGTCAAACAACAGCCAGGTGAGAGCTTGCGTGATTACATAACTCGTTTTAATGATGAGGCACTACAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTGGTAGCCATAACAGCCGGTTTGGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAGCCTCGAACCTATGCGGAGTTCGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGTTACTGAAGTCAAAGAGGTCAGAACGAGAATACAAGAGGTTTTCTTCATCTAGCTACGACAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAAGCCGAGGCCGAGCAGACCATGGCCGAGGCCGAGCAGACCATGGCCGAGGCCGACCAGACAATGGCCGAGGCCGACCAGACCAAGGGGACTACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAGTCCCACAGGAGCAGATCTTGATGGAGATAAGGAATACAAACCTCCTCAGCGCACCCCGGAAGTTGAAGTCAAATCCTGACCACAGAGTCAAAAGCCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACCAGGAACTGCATTCAGCTGAAAGACGAGATCGAAGCGTTGATCCGAAACGGATACCTGAAGGAATTCACCGCAAAGGCCGAGGCCGACCAGAGATGGCCGAGGCCGACCAGAGATGACCCGGGCAAAGATGGTGGTGGACCACTTCTGGAAATCCGTTGA 4347 49.07 MAAPTAEEEANDSFTTTNTVIAINRDKNSQYAVKWAVEHLFNRKNAGDCILIHVRSQSLHPQDAETVPKEYRPPTEAELHQFFLPYRGFCARKGIVAKEIIIHDIDVPSALIDYVSKHPISNIVVGASHRNAIMRKFKHPDVATCLLKTTPESCSVYVIARGKVHTKRLRKRQKSQTDGTETPSGTPHIDRSLSKIQKPAYSNISGFSEDKDRHVSAISNDSLSGSSDFSGPFSFKSIETSSENLDFSLNSSETNSKSFVTSNTTSPIESEMRKLRFELKQTMEMYDSACKEALVAKQKAKELEQLKMEEEKKLEQGRSAEAALTALAEFEKQKSKAATEAALMAQRLAELETQKKRNIAEKKARVEAEEKQKTLDLFERNNICYRRYSINEIEAATDHFNESNKIGEGGYGPVYQALLDHTSVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFRKDNTPPIPWKTRFRIASDIGTALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVSDSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGTFPQILDPTITDWPIEDTLGLAQLALKCCELRKRDRPDLGTVLLPELVRLKNLGMSETPPKGTLSNIGIAPDQRAYNSAPTLKASKDEIKKKWTSKDSDAKKVLTIPLNGKQVDEIRKRQQSSVRCWSFAILDHPDIQGADEDNRGEIGLKDGPRRQNRQMGRAKTEGVGFSARPPTRPRPWAEADPRLARAGRARLVPSGPHRLWMPRSGEILWPKSTINSWRRLWGRKLANLHIGYSMSKGMEKKDQDVNIENSDGDRHQRRSRDDDSIRGSPRPAGRGRAEDADTKIAALEDGVKGMNQSLSRILQILGKPGPSTKVHEGSLIRDPRKGKEPMEHTAESGTRSKGKKTDSMTSKFRGLKPTDRTILRSPESSTLKGRHYTVSTPSYGHTKTDLRNLIVEKRRSAKTAESEAKAAEAEARAAEAEARVAEAEARLAEAEAKKDDLPWKTELLNALKELGNPQGDQQRSKNFGDQNLEELADQVDPPFTEEVMKAEVPQKFKVPTFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYSEGAALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKRSEREYKRFSSSSYDSKKDKRQRTDEGSRGRADHGRGRADHGRGRPDNGRGRPDQGDYLKKFEKYTPTSVPQEQILMEIRNTNLLSAPRKLKSNPDHRVKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTAKAEADQRWPRPTRDDPGKDGGGPLLEIR 1448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48196099 48203643 - Lag0003117.1 Lac4g2997 606529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2997 1448 MobiDBLite consensus disorder prediction 1284 1341 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 1422 1441 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 860 903 - -
Lac4g2997 1448 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 372 472 - -
Lac4g2997 1448 SMART serkin_6 400 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2997 1448 SUPERFAMILY Protein kinase-like (PK-like) 381 659 IPR011009 -
Lac4g2997 1448 Coils Coil 1016 1059 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 939 972 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 1422 1448 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 928 975 - -
Lac4g2997 1448 Gene3D Phosphorylase Kinase; domain 1 368 472 - -
Lac4g2997 1448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2997 1448 PANTHER OS02G0152300 PROTEIN 21 683 IPR051348 -
Lac4g2997 1448 Pfam Protein kinase domain 401 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2997 1448 Pfam Retrotransposon gag protein 1156 1246 IPR005162 -
Lac4g2997 1448 CDD STK_N 19 162 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 754 778 - -
Lac4g2997 1448 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 159 - -
Lac4g2997 1448 Gene3D HUPs 6 161 IPR014729 -
Lac4g2997 1448 Coils Coil 334 381 - -
Lac4g2997 1448 Pfam Universal stress protein family 20 137 IPR006016 -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 167 195 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 754 799 - -
Lac4g2997 1448 MobiDBLite consensus disorder prediction 178 195 - -
Lac4g2997 1448 Coils Coil 293 320 - -
Lac4g2997 1448 Gene3D Transferase(Phosphotransferase) domain 1 473 671 - -
Lac4g2997 1448 ProSiteProfiles Protein kinase domain profile. 400 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2008 Lac-Chr13:27910840 Lac4g2997 Lac-Chr4:48196099 8.80E-82 dispersed
Lac1g1988 Lac-Chr1:41474814 Lac4g2997 Lac-Chr4:48196099 0.00E+00 dispersed
Lac4g0319 Lac-Chr4:7344406 Lac4g2997 Lac-Chr4:48196099 3.60E-131 dispersed
Lac4g0951 Lac-Chr4:23510946 Lac4g2997 Lac-Chr4:48196099 5.70E-123 dispersed
Lac4g1567 Lac-Chr4:34284652 Lac4g2997 Lac-Chr4:48196099 2.90E-122 dispersed
Lac4g2997 Lac-Chr4:48196099 Lac8g1311 Lac-Chr8:28626211 0.00E+00 dispersed
Lac9g2476 Lac-Chr9:43612497 Lac4g2997 Lac-Chr4:48196099 1.40E-68 dispersed
Lac4g0044 Lac-Chr4:733385 Lac4g2997 Lac-Chr4:48196099 2.10E-50 transposed
Lac5g1980 Lac-Chr5:38227354 Lac4g2997 Lac-Chr4:48196099 7.90E-95 transposed
Lac4g2997 Lac-Chr4:48196099 Lac6g3081 Lac-Chr6:48360680 1.70E-118 wgd
Lac4g2997 Lac-Chr4:48196099 Lac6g0173 Lac-Chr6:1398039 2.60E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86178 PF00069 Pkinase 1.70E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2997 - - - 0.0