Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3001 ATGAATTTGGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCAGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCGGCTCTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTGTTGAAAACTCGGCAACAGGTTGCTCATTCGCAGCTTTCTTGCATCAGAACTGCATTTTCGCTTGTCCGCCATGAGGGTTTTCGAGCTCTCTACAGAGGATTTGGGACTTCTCTGATGGGGACTATCCCTGCCAGAGCTCTGTACATGGGAGCTCTTGAGGTTACGAAGAGCTACGTCGGAACTGCCACTGTTAGAATGGGATTTCCAGAGGCTTCTGCTGCTACAATTGCTAATGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTATGGACTCCTGTTGATGTTGTGAGTCAGAGACTCATGGTTCAAAGTAGCTACAATCCCACTGCTCCGAATGCCCATTACATCAATGGGATCGATGCGTTTCGAAAAATCCTCAACGCCGACGGACTCCGAGGCCTCTACCGGGGTTTCGGGATATCGATTTTGACATATGCACCGTCGAATGCAGTGTGGTGGGCTTCGTATTATGTAGCGCAAAGGCTGGTTTGGGGTGGAATTGGATGCTATCATGCTAAGAAGGTTGATGAAGGGAATGAAAATGGAGCTACTAATGTTTACAGACCGGATTCAAAGACTGTGATCGCAGTTCAGGGTGCGAGCGCAGCGATGGCGGGTAGTATCTCAGCCCTGATAACAATGCCTCTTGATACAATCAAAACTAGGTTGCAAGTTTTGGATGGTGATGAAAATGGTAGACGAGGGCCAACAATTGGCCAGACTTTAAGAAATTTAGTAAGGGAAGGCGGCTGGTCGGCGTGTTACAGAGGTTTGGCGCCTCGGTGCGCCTCGATGTCGATGTCTGCAACAACAATGATCACTACATATGAGTTTCTCAAACGGCTATCAACCAAGAATCAAGAGGGTTTAACAAGCTAA 1038 48.17 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLSCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEVTKSYVGTATVRMGFPEASAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSSYNPTAPNAHYINGIDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCYHAKKVDEGNENGATNVYRPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWSACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQEGLTS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48277704 48278741 + Lag0003121.1 Lac4g3001 606533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3001 345 Pfam Mitochondrial carrier protein 125 216 IPR018108 -
Lac4g3001 345 Pfam Mitochondrial carrier protein 250 338 IPR018108 -
Lac4g3001 345 Pfam Mitochondrial carrier protein 36 110 IPR018108 -
Lac4g3001 345 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 8 341 - -
Lac4g3001 345 Gene3D Mitochondrial carrier domain 30 343 IPR023395 -
Lac4g3001 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 215 IPR018108 -
Lac4g3001 345 SUPERFAMILY Mitochondrial carrier 23 332 IPR023395 -
Lac4g3001 345 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Lac4g3001 345 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Lac4g3001 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 246 335 IPR018108 -
Lac4g3001 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3001 Lac-Chr4:48277704 Lac8g1479 Lac-Chr8:32088887 7.80E-13 dispersed
Lac1g1832 Lac-Chr1:40016443 Lac4g3001 Lac-Chr4:48277704 1.00E-24 transposed
Lac7g0998 Lac-Chr7:8606993 Lac4g3001 Lac-Chr4:48277704 4.90E-64 transposed
Lac8g2759 Lac-Chr8:44904718 Lac4g3001 Lac-Chr4:48277704 9.70E-70 transposed
Lac9g2357 Lac-Chr9:42820589 Lac4g3001 Lac-Chr4:48277704 2.70E-23 transposed
Lac2g0482 Lac-Chr2:3519883 Lac4g3001 Lac-Chr4:48277704 5.10E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3001 K15121 - csv:101210602 598.201