Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3002 ATGGAGGATGTGGGGCAAGCAAGAGTCTCGACGGCACGGCGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGCCGGCGCGATGCGAGAGGTAGGGATTGGGATACACTCTGTGTTGGGGGGTGGAAAATGGTGGGAAATGGAGGATTAAGTCTTTCAAGGGGGGGCAATGGTGGGAAGGGAGGGTTGTGGAAGATGAAGATGGACGAACGGGCTGGTATTCTTAGTTGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGAGGTTCTCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGGTATTTACTCCTATTCCCGGGGAACAACTAGGGTACAGAGCCACAAGGACGAGCACGAAGAAACGGCAATGGATGGAGTTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTCGAAGAGTTCTTTCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTACCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTCTGGTTGCTGTCCATAGCGATTCTTGGCTGCTCTCTGTTGCCTTCTATTTTGGTGCGAGATTTGGATTTGATAAATCTGACAGGAGGCGGCTTTTTAATATGATAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGAACCAAGTCAAACTTTAAATCACGGGAAGCTGAAATTCAAGGAATGTATGCAAGGCAGCCGCAGGCAAGGGACGAGAGGGAGGCCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGGGCATGTGGTGAGAATTACGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGCGTTAGAATAACCCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGTCGCATTTAA 1224 47.47 MEDVGQARVSTARRKKVVGTADVGRRRDARGRDWDTLCVGGWKMVGNGGLSLSRGGNGGKGGLWKMKMDERAGILSCRWTGMLFLINGVQRCFSLLTGWLNFVLIVRQEVLNGVQRCFSLLTGWLNFVLIVRQGIYSYSRGTTRVQSHKDEHEETAMDGVGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFFQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAFYFGARFGFDKSDRRRLFNMINELPTVFEVVTGIAKKQVKEKSSSANGSRTKSNFKSREAEIQGMYARQPQARDEREALYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48280054 48283891 - Lag0003122.1 Lac4g3002 606534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3002 407 ProSitePatterns Zinc finger PHD-type signature. 354 400 IPR019786 -
Lac4g3002 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 402 IPR013083 -
Lac4g3002 407 FunFam PHD finger alfin-like protein 346 402 - -
Lac4g3002 407 Pfam PHD-finger 354 400 IPR019787 -
Lac4g3002 407 ProSiteProfiles Zinc finger PHD-type profile. 351 403 IPR019787 -
Lac4g3002 407 PANTHER CPG BINDING PROTEIN 165 406 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac4g3002 407 SMART PHD_3 353 401 IPR001965 -
Lac4g3002 407 Pfam Alfin 167 294 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac4g3002 407 SUPERFAMILY FYVE/PHD zinc finger 343 405 IPR011011 -
Lac4g3002 407 CDD PHD_AL_plant 353 403 IPR044104 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3002 K26274 - - csv:101222322 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1121 Lac-Chr13:9739733 Lac4g3002 Lac-Chr4:48280054 2.50E-35 dispersed
Lac4g0954 Lac-Chr4:23587645 Lac4g3002 Lac-Chr4:48280054 1.40E-45 dispersed
Lac4g3002 Lac-Chr4:48280054 Lac5g1806 Lac-Chr5:36012989 3.10E-93 dispersed
Lac4g3002 Lac-Chr4:48280054 Lac6g3087 Lac-Chr6:48395336 2.80E-110 wgd
Lac4g3002 Lac-Chr4:48280054 Lac6g0152 Lac-Chr6:1296865 6.40E-107 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g1806 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.4 1.4e-112 403.3
Lac6g3087 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.1 2.1e-95 346.3
Lac4g3002 . 157 404 Alfin-like Transcription Factor Family AT1G14510 65.1 8.1e-92 334.3
Lac6g0152 . 1 272 Alfin-like Transcription Factor Family AT1G14510 63.6 8.1e-92 334.3
Lac10g3221 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.8e-78 290.0
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT1G14510 71.4 1.1e-43 174.5
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT5G26210 75.6 6.0e-111 397.9
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT5G26210 67.8 1.2e-103 373.6
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT5G26210 65.7 6.5e-97 351.3
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 7.4e-93 337.8
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.2e-80 295.4
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G26210 75.2 5.8e-45 178.7
Lac6g3087 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.9 2.9e-102 369.0
Lac6g0152 . 1 274 Alfin-like Transcription Factor Family AT3G42790 64.1 3.5e-95 345.5
Lac4g3002 . 157 406 Alfin-like Transcription Factor Family AT3G42790 63.7 1.0e-94 344.0
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.9e-89 325.9
Lac10g3221 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 6.0e-79 291.6
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT3G42790 74.3 4.0e-43 172.6
Lac10g3221 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.5 2.9e-107 385.6
Lac6g3087 . 8 250 Alfin-like Transcription Factor Family AT5G05610 64.8 2.9e-91 332.4
Lac4g3002 . 166 406 Alfin-like Transcription Factor Family AT5G05610 63.6 1.2e-89 327.0
Lac6g0152 . 8 274 Alfin-like Transcription Factor Family AT5G05610 60.7 1.2e-87 320.5
Lac5g1806 . 9 255 Alfin-like Transcription Factor Family AT5G05610 62.5 1.3e-83 307.0
Lac13g1118 . 56 172 Alfin-like Transcription Factor Family AT5G05610 80.3 1.2e-52 204.1
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT5G05610 71.4 7.6e-47 184.9
Lac10g3221 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 1.1e-87 320.5
Lac6g0152 . 66 274 Alfin-like Transcription Factor Family AT3G11200 65.6 2.9e-75 279.3
Lac6g3087 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.6 3.2e-74 275.8
Lac4g3002 . 200 406 Alfin-like Transcription Factor Family AT3G11200 64.5 1.2e-73 273.9
Lac5g1806 . 44 255 Alfin-like Transcription Factor Family AT3G11200 63.4 1.2e-68 257.3
Lac13g1121 . 1 118 Alfin-like Transcription Factor Family AT3G11200 69.4 6.9e-45 178.3
Lac13g1118 . 98 172 Alfin-like Transcription Factor Family AT3G11200 92.0 1.8e-37 153.7
Lac5g1806 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.4e-77 285.4
Lac6g3087 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.0e-65 247.7
Lac4g3002 . 157 314 Alfin-like Transcription Factor Family AT2G02470 74.1 6.1e-63 238.4
Lac6g0152 . 1 180 Alfin-like Transcription Factor Family AT2G02470 68.3 7.5e-61 231.5
Lac10g3221 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.2e-53 207.6
Lac13g1118 . 63 172 Alfin-like Transcription Factor Family AT2G02470 72.3 2.4e-43 173.3
Lac6g3087 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 3.2e-72 268.9
Lac4g3002 . 157 318 Alfin-like Transcription Factor Family AT5G20510 77.1 9.5e-69 257.3
Lac6g0152 . 1 189 Alfin-like Transcription Factor Family AT5G20510 67.4 2.8e-68 255.8
Lac5g1806 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.4e-64 242.7
Lac10g3221 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-51 200.3
Lac13g1118 . 62 166 Alfin-like Transcription Factor Family AT5G20510 73.3 1.8e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23789 PF12165 Alfin 3.20E-67 No_clan Lac TF