Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3002 ATGGAGGATGTGGGGCAAGCAAGAGTCTCGACGGCACGGCGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGCCGGCGCGATGCGAGAGGTAGGGATTGGGATACACTCTGTGTTGGGGGGTGGAAAATGGTGGGAAATGGAGGATTAAGTCTTTCAAGGGGGGGCAATGGTGGGAAGGGAGGGTTGTGGAAGATGAAGATGGACGAACGGGCTGGTATTCTTAGTTGCAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGAGGTTCTCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGGTATTTACTCCTATTCCCGGGGAACAACTAGGGTACAGAGCCACAAGGACGAGCACGAAGAAACGGCAATGGATGGAGTTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTCGAAGAGTTCTTTCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTACCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTCTGGTTGCTGTCCATAGCGATTCTTGGCTGCTCTCTGTTGCCTTCTATTTTGGTGCGAGATTTGGATTTGATAAATCTGACAGGAGGCGGCTTTTTAATATGATAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGAACCAAGTCAAACTTTAAATCACGGGAAGCTGAAATTCAAGGAATGTATGCAAGGCAGCCGCAGGCAAGGGACGAGAGGGAGGCCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGTGGGGCATGTGGTGAGAATTACGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGCGTTAGAATAACCCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAGGTCGCATTTAA 1224 47.47 MEDVGQARVSTARRKKVVGTADVGRRRDARGRDWDTLCVGGWKMVGNGGLSLSRGGNGGKGGLWKMKMDERAGILSCRWTGMLFLINGVQRCFSLLTGWLNFVLIVRQEVLNGVQRCFSLLTGWLNFVLIVRQGIYSYSRGTTRVQSHKDEHEETAMDGVGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFFQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAFYFGARFGFDKSDRRRLFNMINELPTVFEVVTGIAKKQVKEKSSSANGSRTKSNFKSREAEIQGMYARQPQARDEREALYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRGRI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48280054 48283891 - Lag0003122.1 Lac4g3002 606534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3002 407 ProSitePatterns Zinc finger PHD-type signature. 354 400 IPR019786 -
Lac4g3002 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 402 IPR013083 -
Lac4g3002 407 FunFam PHD finger alfin-like protein 346 402 - -
Lac4g3002 407 Pfam PHD-finger 354 400 IPR019787 -
Lac4g3002 407 ProSiteProfiles Zinc finger PHD-type profile. 351 403 IPR019787 -
Lac4g3002 407 PANTHER CPG BINDING PROTEIN 165 406 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lac4g3002 407 SMART PHD_3 353 401 IPR001965 -
Lac4g3002 407 Pfam Alfin 167 294 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lac4g3002 407 SUPERFAMILY FYVE/PHD zinc finger 343 405 IPR011011 -
Lac4g3002 407 CDD PHD_AL_plant 353 403 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1121 Lac-Chr13:9739733 Lac4g3002 Lac-Chr4:48280054 2.50E-35 dispersed
Lac4g0954 Lac-Chr4:23587645 Lac4g3002 Lac-Chr4:48280054 1.40E-45 dispersed
Lac4g3002 Lac-Chr4:48280054 Lac5g1806 Lac-Chr5:36012989 3.10E-93 dispersed
Lac4g3002 Lac-Chr4:48280054 Lac6g3087 Lac-Chr6:48395336 2.80E-110 wgd
Lac4g3002 Lac-Chr4:48280054 Lac6g0152 Lac-Chr6:1296865 6.40E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23789 PF12165 Alfin 3.20E-67 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3002 K26274 - csv:101222322 491.115