Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3025 ATGAGTGTTAGATCTTCTCTTTCTGTTATCAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTTACCTTCAAAGAACTTACTGACCTCACTCAAAATTTTACCAAAAGTAACTATTTGGGGGAAGGGGGGTTTGGGCCTGTGTTTAAAGGGTTCATTGAAGAGAATTTCAAGGCTGGTTTGAAGTCTCAGCAAGTGGCTGTGAAGATTTTGGACTTGGATGGCTCTCAAGGCCATAGGGAATGGCTGGCTGAAGTGTTCTTTCTTGGGCAACTGAGACACCCAAATCTTGTTAATTTGATTGGGTACTGCCTTGAAGATGAGCAGAGGCTTCTTGTTTATGAATATATGGAAGGTGGAAACTTGGAGAATTTGTTGTTTAAAGGTTGTTATGTTTCAAATTTGACATGGTTGCAAAGGATGAAGATTGCATTAGGATCAGCTAAAGGCCTTGCTTTTCTCCACGAGGCCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGACTACAATCCCAAGCTTTCGGATTTCGGGTTGGCCATAAATGGTCCCGACGAAAACGATACGCACATAACGACTCGGATCATGGGGACAGAAGGCTATGCAGCCCCAGAATACATCATGACAGGTCATCTGTCAACAATGAGTGATGTGTTCAGCTTTGGAGTGTTTTTACTAGAGTTGCTGACCGGGCGACGAGCGGTCGACAGGAGCCGCCCGAGCCGAGAACAGAACTTGGTAGCTTGGGGGAGATATCTCTTGAAAGATCACCACAAACTTGAGAAGATAATTGATCCAAGGCTTGAAGGGCAGTACTCAAATGAAGGGGCTAAAAAATTGGCTGCAATAGCTTACCAATGCCTTAGCCACCACCCCAAATGCAGGCCTTCAATGGCCTCAGTGGTCAAAGATTTAGAGGCTGTCCTTAACATGAAAGAGTTTCTAACTGAGCCATTTGTGTACATTGTCCCAAATGAAGAGACCAAAAAGGAAGATGTAGAGAAGAAGATGACTAAAGAGGTGGAGCCAGTGAAGAGACCGGAGAGCCGTCCCGGGGACCAAAAGGATCGCCGCTTTAGGCCTCGGTTGCTGTCATTGAAGTCGAGGTCGAGGTCGAGATCAGGTGCTGTTCATTCTGATACAGCATTGTACAAGACTCTTGGAAGCAGTTTTTACACTTCAAAACAGGCTGCTGCTATTGTTTCTGCTTTGGTGAAAAGCACTGGGAATTAG 1263 44.5 MSVRSSLSVISDLSNSCNGSNLQIFTFKELTDLTQNFTKSNYLGEGGFGPVFKGFIEENFKAGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKGCYVSNLTWLQRMKIALGSAKGLAFLHEAEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDENDTHITTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVFLLELLTGRRAVDRSRPSREQNLVAWGRYLLKDHHKLEKIIDPRLEGQYSNEGAKKLAAIAYQCLSHHPKCRPSMASVVKDLEAVLNMKEFLTEPFVYIVPNEETKKEDVEKKMTKEVEPVKRPESRPGDQKDRRFRPRLLSLKSRSRSRSGAVHSDTALYKTLGSSFYTSKQAAAIVSALVKSTGN 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48421896 48423537 + Lag0003145.1 Lac4g3025 606557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3025 420 MobiDBLite consensus disorder prediction 341 389 - -
Lac4g3025 420 Pfam Protein tyrosine and serine/threonine kinase 40 315 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g3025 420 SUPERFAMILY Protein kinase-like (PK-like) 14 316 IPR011009 -
Lac4g3025 420 FunFam Serine/threonine-protein kinase BIK1 4 119 - -
Lac4g3025 420 Gene3D Phosphorylase Kinase; domain 1 8 119 - -
Lac4g3025 420 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 120 327 - -
Lac4g3025 420 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Lac4g3025 420 CDD STKc_IRAK 43 316 - -
Lac4g3025 420 MobiDBLite consensus disorder prediction 341 373 - -
Lac4g3025 420 PANTHER OS01G0588500 PROTEIN-RELATED 18 319 IPR050823 -
Lac4g3025 420 ProSiteProfiles Protein kinase domain profile. 37 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3025 Lac-Chr4:48421896 Lac5g2280 Lac-Chr5:41478514 6.70E-107 dispersed
Lac2g0501 Lac-Chr2:3689112 Lac4g3025 Lac-Chr4:48421896 1.30E-105 wgd
Lac3g1088 Lac-Chr3:8979434 Lac4g3025 Lac-Chr4:48421896 4.40E-125 wgd
Lac4g3025 Lac-Chr4:48421896 Lac6g3106 Lac-Chr6:48487171 3.80E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86179 PF07714 PK_Tyr_Ser-Thr 5.20E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3025 - - - 0.0