Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3061 ATGCCTCCAATGGTGTTTCATTCACAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATTCCCTGGGGCAGTGTTCCTGAAGATAAATGTAAGAATGATAATCCAGAGGATCAGCTGAGATATCCCTTTCCACAATTAACTTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATGAGTTTTGTAGAGTTATTGAAACGTATAAACCAAACATTGTTTACTTACAAGGGGAACTGCTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATCTGTCCACCGTAGAGGCGATAAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTTACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCAGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTGTTTTTCCTGAGAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGACCACATCTTCTAGGGGAACGTTTGAAAATAAATGTTGAACCCCTAGCCCTAGAGAAAGATGCAGATGATGATGAAGAAAGTTCATCGGAAATTCCTTCGGTGAGCGTACTTGATAATGATGTGGAAATGAGATTTCTTGTCTGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACACCCTCTTGGACATTGAAATTCGAGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCAACATGCAGTTTTGCCCACGTCTCACTATTGGTGTCAGGCAGTGCTCAAGCTTGTTTCGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAACTAGTACAGACACTAATAGACGATGAAGGAAGCAAACATCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTACTTTTCTTCTGTTCAAGGAAGGAAAAAGATTCATTTCTGAGCAATTTAACTGATAGCACACTCCCTAGCTGGTTGAAGCCACCTGCTCCTAGAAAGAGGTCGAAAAATATGAAAGATACTAGCCATGTTTCTCATGATGTTATTGGACATCTGAAGTTTTCGTCTGGTAGCAGAATAGGTGGTGAGAACATGGAAGTAGGATCAAGGAATGGTTTTAACACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGGTTAAAGCTAGTGTTCCTTCTATTAATCCCACAAAGCATGTTACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACCAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTACAGTTTCTTGCTCTTCGAGGTCATAATCGCCTTATTCCTCCGGGTGGGCTAGCTGAGTTTCCGGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGCGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATATTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCGTTTGTGGCGAGTGGGCCCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAGAGTGGCAAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2361 42.57 MPPMVFHSQVPARYTCRLLAIPWGSVPEDKCKNDNPEDQLRYPFPQLTSSGRLEVQVLSNPSKDEFCRVIETYKPNIVYLQGELLENDEVGSLVWGGVDLSTVEAISGLFSSPLPTTVYLEIANGDEVADALYSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNSLVFPESSHKEVSEDLGPHLLGERLKINVEPLALEKDADDDEESSSEIPSVSVLDNDVEMRFLVCGEPGSLDAYVLGALEDGLNTLLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDDEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDSFLSNLTDSTLPSWLKPPAPRKRSKNMKDTSHVSHDVIGHLKFSSGSRIGGENMEVGSRNGFNTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGGHNGGLVKASVPSINPTKHVTVGSASVLQQKMFPSASQYKPIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKRVANGLSPGLSSRPI 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48754215 48759500 - Lag0003181.1 Lac4g3061 606593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3061 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 772 IPR013083 -
Lac4g3061 786 SMART bright_3 603 707 IPR001606 GO:0003677(InterPro)
Lac4g3061 786 SMART ARID_2 599 702 - -
Lac4g3061 786 CDD ARID 605 702 - -
Lac4g3061 786 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677(InterPro)
Lac4g3061 786 CDD PHD_ARID4_like 712 763 - -
Lac4g3061 786 Gene3D - 599 702 IPR036431 GO:0003677(InterPro)
Lac4g3061 786 SUPERFAMILY FYVE/PHD zinc finger 698 766 IPR011011 -
Lac4g3061 786 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 778 IPR042293 -
Lac4g3061 786 SUPERFAMILY ARID-like 605 717 IPR036431 GO:0003677(InterPro)
Lac4g3061 786 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1198 Lac-Chr12:16490550 Lac4g3061 Lac-Chr4:48754215 8.30E-19 dispersed
Lac12g2513 Lac-Chr12:42082875 Lac4g3061 Lac-Chr4:48754215 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23796 PF01388 ARID 2.50E-15 CL0123 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3061 - - - 0.0