Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3061 ATGCCTCCAATGGTGTTTCATTCACAAGTTCCTGCTAGATATACTTGTAGGCTTCTTGCAATTCCCTGGGGCAGTGTTCCTGAAGATAAATGTAAGAATGATAATCCAGAGGATCAGCTGAGATATCCCTTTCCACAATTAACTTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATGAGTTTTGTAGAGTTATTGAAACGTATAAACCAAACATTGTTTACTTACAAGGGGAACTGCTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATCTGTCCACCGTAGAGGCGATAAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTTACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCAGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAGCCTTGTTTTTCCTGAGAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGACCACATCTTCTAGGGGAACGTTTGAAAATAAATGTTGAACCCCTAGCCCTAGAGAAAGATGCAGATGATGATGAAGAAAGTTCATCGGAAATTCCTTCGGTGAGCGTACTTGATAATGATGTGGAAATGAGATTTCTTGTCTGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACACCCTCTTGGACATTGAAATTCGAGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCAACATGCAGTTTTGCCCACGTCTCACTATTGGTGTCAGGCAGTGCTCAAGCTTGTTTCGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGCGAACTAGTACAGACACTAATAGACGATGAAGGAAGCAAACATCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTACTTTTCTTCTGTTCAAGGAAGGAAAAAGATTCATTTCTGAGCAATTTAACTGATAGCACACTCCCTAGCTGGTTGAAGCCACCTGCTCCTAGAAAGAGGTCGAAAAATATGAAAGATACTAGCCATGTTTCTCATGATGTTATTGGACATCTGAAGTTTTCGTCTGGTAGCAGAATAGGTGGTGAGAACATGGAAGTAGGATCAAGGAATGGTTTTAACACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGGTTAAAGCTAGTGTTCCTTCTATTAATCCCACAAAGCATGTTACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACCAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTACAGTTTCTTGCTCTTCGAGGTCATAATCGCCTTATTCCTCCGGGTGGGCTAGCTGAGTTTCCGGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGCGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATATTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCGTTTGTGGCGAGTGGGCCCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAGAGTGGCAAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2361 42.57 MPPMVFHSQVPARYTCRLLAIPWGSVPEDKCKNDNPEDQLRYPFPQLTSSGRLEVQVLSNPSKDEFCRVIETYKPNIVYLQGELLENDEVGSLVWGGVDLSTVEAISGLFSSPLPTTVYLEIANGDEVADALYSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNSLVFPESSHKEVSEDLGPHLLGERLKINVEPLALEKDADDDEESSSEIPSVSVLDNDVEMRFLVCGEPGSLDAYVLGALEDGLNTLLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDDEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDSFLSNLTDSTLPSWLKPPAPRKRSKNMKDTSHVSHDVIGHLKFSSGSRIGGENMEVGSRNGFNTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGGHNGGLVKASVPSINPTKHVTVGSASVLQQKMFPSASQYKPIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKRVANGLSPGLSSRPI 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48754215 48759500 - Lag0003181.1 Lac4g3061 606593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3061 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 772 IPR013083 -
Lac4g3061 786 SMART bright_3 603 707 IPR001606 GO:0003677(InterPro)
Lac4g3061 786 SMART ARID_2 599 702 - -
Lac4g3061 786 CDD ARID 605 702 - -
Lac4g3061 786 ProSiteProfiles ARID domain profile. 602 706 IPR001606 GO:0003677(InterPro)
Lac4g3061 786 CDD PHD_ARID4_like 712 763 - -
Lac4g3061 786 Gene3D - 599 702 IPR036431 GO:0003677(InterPro)
Lac4g3061 786 SUPERFAMILY FYVE/PHD zinc finger 698 766 IPR011011 -
Lac4g3061 786 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 778 IPR042293 -
Lac4g3061 786 SUPERFAMILY ARID-like 605 717 IPR036431 GO:0003677(InterPro)
Lac4g3061 786 Pfam ARID/BRIGHT DNA binding domain 605 702 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1198 Lac-Chr12:16490550 Lac4g3061 Lac-Chr4:48754215 8.30E-19 dispersed
Lac12g2513 Lac-Chr12:42082875 Lac4g3061 Lac-Chr4:48754215 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23796 PF01388 ARID 2.50E-15 CL0123 Lac TR