Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g3068 | ATGAAAGAGACTGATACCATGGAAAACCCCCTCGCCGCCGGAATCTCAAATTCCGGCCACCAATCCGCCACCGGAAAAAACCCCAAAAACAAAAAGAAGCTCTTGATCGTAGCCCTCTCCTCCACCCTCCTCCTCGTCTGCGCCGTCGTCGGCATTGTCGCCGGCGTGACCGGTTCAAAGAAGTCCGGCGACCGGTCGAAAGCACACGCCATTTTGAAGAGCACGTGCAGCAGCACGCGGTATCCCGATCTGTGCTTCTCGGCCATTTCCGAACACGACGGAGCCTTGAAGAAAGTGACGAATCAGAAGGACGTTATCGAGCTTTCGATTAATATCACTGTGAAAGCTGTGGAAGAAAACTACTTTCGAGTGCAGAAATTGGCGGCGCTGAAGAATATTTCTCACAGAGAGAGAATTGCCCTTCACGATTGCCTTGAAACCATTGATGAAACGCTTGATGAGCTTCATAAAGCCATTGTGGATCTCCATGAGTATCCTAATAAGAAATCTCTTAACCAACATGCTGATGATCTTAAGACCTTGCTCAGTTCCGCCATTACTAATCAGGAGACCTGCCTCGACGGGTTTTCCCACGACGAGGCGGACAAGAACCTGCGGGACAAGCTGAAAGAGGGCCAGACCGAAGTGGAGCACATGTGCAGCAATGCGCTAGCCATGATTAAGAACATGACGGATACAGACATAGCCAATTACGAGGCTAAAATGGGAACACCCAACAGAAAGCTCAAGGAGGAGAGCAACCACCACGACGGCATCCAGTGGCCGGAGTGGCTGTCGGCCGGAGACCGCCGTCTGCTTCAGTCCTCCTCCGTGACGCCGGACGTGGTCGTGGCGGCGGACGGCAGCGGAAACTTCCGGACGGTGGCCTCCGCCGTGGCCGCCGCTCCGGTGAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAACGTGGAAGTGCCGAAGAAGAAGACGAATATTATGTTTATGGGAGATGGAAGGAGTAATACTATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGGGAAGGATTTCTAGCGCGTGACATCACTTTCCAAAACACAGCTGGTCCGTCAAAGCACCAAGCGGTGGCGCTCCGCGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCCTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGACTTCATCTTCGGCAACGCGGCGGCGGTTTTCCAGGACTGTGACATTCACGCGCGCAGACCAAACTCCGGTCAGAAAAACATGGTAACGGCCCAGGGTCGGTCCGACCCGAACCAGAACACCGGAATAGTGATCCAGAAATCCCGGATCGGAGCCACGTCGGATCTCCGGCCGGTCCAGAAGAACTTTCCGACGTTCCTCGGAAGGCCGTGGAAGGAATATTCTAGAACCGTGATTATGCAGTCGTCGATAAGTGACGTCATTGACCCGAAGGGGTGGCATGAGTGGAGCGGTAATTTTGCCCTCAGTACTTTGTTTTACGGCGAGTATCAGAACACTGGACCGGGTGCTTCGACGGCCGGTCGGGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACGGAGGCCGAGCCTTTTACTGCTGGTAAATTTATTGGCGGTGGGAGCTGGTTGCGGTCTACTGGTTTTCCTTTCTCTCTAGGGCTATAA | 1779 | 53.29 | MKETDTMENPLAAGISNSGHQSATGKNPKNKKKLLIVALSSTLLLVCAVVGIVAGVTGSKKSGDRSKAHAILKSTCSSTRYPDLCFSAISEHDGALKKVTNQKDVIELSINITVKAVEENYFRVQKLAALKNISHRERIALHDCLETIDETLDELHKAIVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQTEVEHMCSNALAMIKNMTDTDIANYEAKMGTPNRKLKEESNHHDGIQWPEWLSAGDRRLLQSSSVTPDVVVAADGSGNFRTVASAVAAAPVKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSSISDVIDPKGWHEWSGNFALSTLFYGEYQNTGPGASTAGRVTWKGFRVIRSATEAEPFTAGKFIGGGSWLRSTGFPFSLGL | 592 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 48810519 | 48814493 | - | Lag0003188.1 | Lac4g3068 | 606600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g3068 | 592 | CDD | PMEI-like_3 | 74 | 231 | - | - | |
| Lac4g3068 | 592 | Gene3D | - | 275 | 592 | IPR012334 | - | |
| Lac4g3068 | 592 | SUPERFAMILY | Pectin lyase-like | 278 | 591 | IPR011050 | - | |
| Lac4g3068 | 592 | FunFam | Pectinesterase | 68 | 231 | - | - | |
| Lac4g3068 | 592 | PANTHER | PECTINESTERASE | 33 | 583 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Lac4g3068 | 592 | Pfam | Plant invertase/pectin methylesterase inhibitor | 71 | 226 | IPR006501 | GO:0004857(InterPro) | |
| Lac4g3068 | 592 | SMART | PMEI_2 | 67 | 226 | IPR006501 | GO:0004857(InterPro) | |
| Lac4g3068 | 592 | Pfam | Pectinesterase | 281 | 577 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Lac4g3068 | 592 | ProSitePatterns | Pectinesterase signature 2. | 425 | 434 | IPR033131 | - | |
| Lac4g3068 | 592 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 68 | 231 | IPR035513 | - | |
| Lac4g3068 | 592 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 71 | 231 | IPR035513 | - | |
| Lac4g3068 | 592 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Lac4g3068 | 592 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - | |
| Lac4g3068 | 592 | ProSitePatterns | Pectinesterase signature 1. | 306 | 325 | IPR018040 | - | |
| Lac4g3068 | 592 | NCBIfam | pectinesterase inhibitor domain | 40 | 230 | IPR006501 | GO:0004857(InterPro) | |
| Lac4g3068 | 592 | FunFam | Pectinesterase | 275 | 592 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g1968 | Lac-Chr4:39158236 | Lac4g3068 | Lac-Chr4:48810519 | 2.30E-179 | dispersed | |
| Lac4g2484 | Lac-Chr4:44164172 | Lac4g3068 | Lac-Chr4:48810519 | 7.10E-141 | dispersed | |
| Lac4g3068 | Lac-Chr4:48810519 | Lac8g1609 | Lac-Chr8:33968880 | 6.50E-124 | dispersed | |
| Lac12g2508 | Lac-Chr12:42045189 | Lac4g3068 | Lac-Chr4:48810519 | 7.80E-220 | wgd | |
| Lac3g1115 | Lac-Chr3:9203718 | Lac4g3068 | Lac-Chr4:48810519 | 3.80E-17 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g3068 | K01051 | - | csv:101212388 | 1020.38 |