Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3072 ATGAATTGGAGGTGGACGGAGCTGGTTTCTCTCATCATTCTTTGCATTCTGGGGTTGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCATCAGATGCATCTGCTTTGAGAGTTTTGTACACCAGCTTAAACTCGCCGTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGATTACTTGCACTGGCTCACGGATTACAGAAATAAACTTATCTGGTCTCCAGCTCAGTGGATCGCTCGGATACCAGCTTGCAAGTTTGACATCGGTAACGAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCAAACCTGAAGAGCCTAAATCTTGCTCGAAACAACTTCAATAAAGGCATCCCCTATTCCATTTCCTTGATGACCAATCTTCAATACCTAAATCTCAGTCGTAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCACTATCCACATTGGATCTGTCTTTCAATTCTATATCAGGCGAACTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCCAATCTTCCTCTTGATAACCTGAATGTTGAAAACAATCGTTTCTCTGGCTGGATCCCTGATCAACTGAAAAGCATCAATCTGCAGAAAGATGGCAACGCCTGGAACTCTGGTCCTGCACCCCCTCCTCCACCTGGTACACCTCCAGCCACCAGAAGGAACAGAAGTCATAATTCTGGTGGCAATAGTCCATCAAATGATGGTTCTGGTGAAGGTCAGAAGTCAGGAATTAGTGGTGGTGGCATTGCAGGAATTATCATCTCTGTGCTTGTTGTTGGAGCTGTAGTAGCATTCTTCCTTGTTAGGAGGAGATCCAAGAGATCATCTTCAGACATTGAAAAGCTTGACAATCAACCACTCCAACCTCTTAAAACGACTGCACCGCAAGAAATAAAGTCTGAAGAGACTTCCTCCACATTTTATCCAACAACATTTGAAACTTCTGCTACAATTAATCTAAAACCCCCACCTATTGATCGTCATAAATCGTTTGATGAAGACGACTTTGCAAAAAGAGCCATTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAAATAGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAATTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCTCAGTTACATCATCCCAATATAACTGAACTCGTGGGATATTGCTCAGAGCACGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTCTTGCATCTTTCAGATGAATACAACAAGCCACTGATATGGAATTCCCGTGTTAAGATTGCTTTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCTCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCTGAACTCAGCCCGCACCTTTCTGATTCTGGACTTGAAAGCTTTGTACCAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCTGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGCGATGTCTACAGTTTCGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGTCCGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGACCCAGATCTCAATGGACTTTATCCAGTTAAATCTCTCTCCCGATTTGCCGATGTGATTGCACTTTGCGTCCAGATGGAACCTGAGTTCAGACCTCCAATGTCAGAGGTGGTCGAAGCATTGGTTCGTCTGGTGCAGCGAGCTAACATGAGTAAGAGAACGTTTGGAAATGATAATGTAGCATCTCCCAGAGGAGACATGGGCGGGGAGGACACACCATAA 2142 43.7 MNWRWTELVSLIILCILGLKPSSIQGATDPSDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCTGSRITEINLSGLQLSGSLGYQLASLTSVTNLDVSNNNIGGEIVYQLPPNLKSLNLARNNFNKGIPYSISLMTNLQYLNLSRNQLQNPLIDMFGQLTSLSTLDLSFNSISGELPQSFSSLSSISTMYLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPDQLKSINLQKDGNAWNSGPAPPPPPGTPPATRRNRSHNSGGNSPSNDGSGEGQKSGISGGGIAGIIISVLVVGAVVAFFLVRRRSKRSSSDIEKLDNQPLQPLKTTAPQEIKSEETSSTFYPTTFETSATINLKPPPIDRHKSFDEDDFAKRAIVKKASAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQALDHNASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRSEQSLVRWATPQLHDIDALTKMVDPDLNGLYPVKSLSRFADVIALCVQMEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNVASPRGDMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48844313 48849831 - Lag0003192.1 Lac4g3072 606604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3072 713 SUPERFAMILY L domain-like 28 233 - -
Lac4g3072 713 CDD STKc_IRAK 415 684 - -
Lac4g3072 713 MobiDBLite consensus disorder prediction 238 284 - -
Lac4g3072 713 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lac4g3072 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Lac4g3072 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g3072 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 161 686 IPR046959 -
Lac4g3072 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Lac4g3072 713 Gene3D Ribonuclease Inhibitor 181 246 IPR032675 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 260 282 - -
Lac4g3072 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 323 346 - -
Lac4g3072 713 Gene3D Transferase(Phosphotransferase) domain 1 488 702 - -
Lac4g3072 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Lac4g3072 713 SMART LRR_typ_2 95 123 IPR003591 -
Lac4g3072 713 SMART LRR_typ_2 165 188 IPR003591 -
Lac4g3072 713 SMART LRR_typ_2 141 164 IPR003591 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 694 713 - -
Lac4g3072 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 486 - -
Lac4g3072 713 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Lac4g3072 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Lac4g3072 713 Pfam Leucine Rich repeat 96 113 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 MobiDBLite consensus disorder prediction 318 346 - -
Lac4g3072 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3072 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3304 Lac-Chr1:52814334 Lac4g3072 Lac-Chr4:48844313 1.80E-94 dispersed
Lac4g3072 Lac-Chr4:48844313 Lac8g1144 Lac-Chr8:24508255 3.70E-142 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac4g3072 Lac-Chr4:48844313 7.50E-210 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac10g1387 . 390 683 Strubbelig Receptor Gene Family AT1G11130 53.7 3.1e-85 313.9
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac12g2502 . 255 973 Strubbelig Receptor Gene Family AT1G53730 55.1 1.2e-201 700.7
Lac4g3072 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.6 2.3e-192 669.8
Lac8g1144 . 5 682 Strubbelig Receptor Gene Family AT1G53730 51.4 4.0e-152 536.2
Lac12g2502 . 265 977 Strubbelig Receptor Gene Family AT3G14350 51.0 1.6e-182 637.1
Lac4g3072 . 10 696 Strubbelig Receptor Gene Family AT3G14350 56.4 9.7e-172 601.3
Lac10g1387 . 338 713 Strubbelig Receptor Gene Family AT4G22130 81.9 2.6e-175 612.8
Lac12g2502 . 661 989 Strubbelig Receptor Gene Family AT4G22130 63.4 1.2e-119 427.9
Lac4g3072 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.8 3.0e-118 423.3
Lac12g0685 . 474 769 Strubbelig Receptor Gene Family AT4G22130 62.0 1.5e-106 384.4
Lac8g1144 . 346 696 Strubbelig Receptor Gene Family AT4G22130 52.5 1.4e-99 361.3
Lac10g2573 . 485 807 Strubbelig Receptor Gene Family AT4G22130 52.6 8.7e-94 342.0
Lac1g3304 . 610 877 Strubbelig Receptor Gene Family AT4G22130 60.0 1.7e-89 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86180 PF07714 PK_Tyr_Ser-Thr 2.20E-43 CL0016 Lac PK