Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3072 ATGAATTGGAGGTGGACGGAGCTGGTTTCTCTCATCATTCTTTGCATTCTGGGGTTGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCATCAGATGCATCTGCTTTGAGAGTTTTGTACACCAGCTTAAACTCGCCGTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGATTACTTGCACTGGCTCACGGATTACAGAAATAAACTTATCTGGTCTCCAGCTCAGTGGATCGCTCGGATACCAGCTTGCAAGTTTGACATCGGTAACGAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCAAACCTGAAGAGCCTAAATCTTGCTCGAAACAACTTCAATAAAGGCATCCCCTATTCCATTTCCTTGATGACCAATCTTCAATACCTAAATCTCAGTCGTAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCACTATCCACATTGGATCTGTCTTTCAATTCTATATCAGGCGAACTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCCAATCTTCCTCTTGATAACCTGAATGTTGAAAACAATCGTTTCTCTGGCTGGATCCCTGATCAACTGAAAAGCATCAATCTGCAGAAAGATGGCAACGCCTGGAACTCTGGTCCTGCACCCCCTCCTCCACCTGGTACACCTCCAGCCACCAGAAGGAACAGAAGTCATAATTCTGGTGGCAATAGTCCATCAAATGATGGTTCTGGTGAAGGTCAGAAGTCAGGAATTAGTGGTGGTGGCATTGCAGGAATTATCATCTCTGTGCTTGTTGTTGGAGCTGTAGTAGCATTCTTCCTTGTTAGGAGGAGATCCAAGAGATCATCTTCAGACATTGAAAAGCTTGACAATCAACCACTCCAACCTCTTAAAACGACTGCACCGCAAGAAATAAAGTCTGAAGAGACTTCCTCCACATTTTATCCAACAACATTTGAAACTTCTGCTACAATTAATCTAAAACCCCCACCTATTGATCGTCATAAATCGTTTGATGAAGACGACTTTGCAAAAAGAGCCATTGTCAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAAATAGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTATCGGGCTGAATTTGATGATGGGAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCTCAGTTACATCATCCCAATATAACTGAACTCGTGGGATATTGCTCAGAGCACGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTCTTGCATCTTTCAGATGAATACAACAAGCCACTGATATGGAATTCCCGTGTTAAGATTGCTTTGGGAACAGCACGTGCATTAGAGTATCTTCATGAAGTTTGCTCTCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTGCTGGATGCTGAACTCAGCCCGCACCTTTCTGATTCTGGACTTGAAAGCTTTGTACCAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCTGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGCGATGTCTACAGTTTCGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGTCCGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGACCCAGATCTCAATGGACTTTATCCAGTTAAATCTCTCTCCCGATTTGCCGATGTGATTGCACTTTGCGTCCAGATGGAACCTGAGTTCAGACCTCCAATGTCAGAGGTGGTCGAAGCATTGGTTCGTCTGGTGCAGCGAGCTAACATGAGTAAGAGAACGTTTGGAAATGATAATGTAGCATCTCCCAGAGGAGACATGGGCGGGGAGGACACACCATAA 2142 43.7 MNWRWTELVSLIILCILGLKPSSIQGATDPSDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCTGSRITEINLSGLQLSGSLGYQLASLTSVTNLDVSNNNIGGEIVYQLPPNLKSLNLARNNFNKGIPYSISLMTNLQYLNLSRNQLQNPLIDMFGQLTSLSTLDLSFNSISGELPQSFSSLSSISTMYLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPDQLKSINLQKDGNAWNSGPAPPPPPGTPPATRRNRSHNSGGNSPSNDGSGEGQKSGISGGGIAGIIISVLVVGAVVAFFLVRRRSKRSSSDIEKLDNQPLQPLKTTAPQEIKSEETSSTFYPTTFETSATINLKPPPIDRHKSFDEDDFAKRAIVKKASAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFVPNADQALDHNASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRSEQSLVRWATPQLHDIDALTKMVDPDLNGLYPVKSLSRFADVIALCVQMEPEFRPPMSEVVEALVRLVQRANMSKRTFGNDNVASPRGDMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48844313 48849831 - Lag0003192.1 Lac4g3072 606604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3072 713 SUPERFAMILY L domain-like 28 233 - -
Lac4g3072 713 CDD STKc_IRAK 415 684 - -
Lac4g3072 713 MobiDBLite consensus disorder prediction 238 284 - -
Lac4g3072 713 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Lac4g3072 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Lac4g3072 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g3072 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 161 686 IPR046959 -
Lac4g3072 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Lac4g3072 713 Gene3D Ribonuclease Inhibitor 181 246 IPR032675 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 260 282 - -
Lac4g3072 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 323 346 - -
Lac4g3072 713 Gene3D Transferase(Phosphotransferase) domain 1 488 702 - -
Lac4g3072 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Lac4g3072 713 SMART LRR_typ_2 95 123 IPR003591 -
Lac4g3072 713 SMART LRR_typ_2 165 188 IPR003591 -
Lac4g3072 713 SMART LRR_typ_2 141 164 IPR003591 -
Lac4g3072 713 MobiDBLite consensus disorder prediction 694 713 - -
Lac4g3072 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 374 486 - -
Lac4g3072 713 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Lac4g3072 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Lac4g3072 713 Pfam Leucine Rich repeat 96 113 IPR001611 GO:0005515(InterPro)
Lac4g3072 713 MobiDBLite consensus disorder prediction 318 346 - -
Lac4g3072 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3304 Lac-Chr1:52814334 Lac4g3072 Lac-Chr4:48844313 1.80E-94 dispersed
Lac4g3072 Lac-Chr4:48844313 Lac8g1144 Lac-Chr8:24508255 3.70E-142 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac4g3072 Lac-Chr4:48844313 7.50E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86180 PF07714 PK_Tyr_Ser-Thr 2.20E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3072 - - - 0.0