Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3082 ATGACGTCTCGTGGTTCATCCGCTTCCGCCAATGGCTTATTGCCGCTCACGGTTTCCACGTCCGGCCGGCATAATGATATTGAGTCTGGCCTCTCCTCCAGCAAAAGCATTAGCGAGGAGGAAGAAGAGGCTGTATCCGATCCTTTTGACATTGACAATACCAAAAATGTCCCTCTCGAGATACTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTAGAAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGAAGGATGATTAGAGCCCATGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTCCTCAGTATCACCTCCAACGTCAACTGGTGACTACGCCATTAGTTTAGAACACCTTGCTTCATTGACCCGTGATCAAAAAATTTCTTCTCTTCAACAATATGGGGGAGTTAAAGGGTTATCAAATTTATTAAAAACAAATACCGAGAAAGGAATATCAGGAGATGAAACTGATTTACTGAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAGTCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGGATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTGTTTCTTGTCATTATAGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTTTCGATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCCGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCCCCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGACTGTTGATGGCAAGTATCTCAGAGGATACCGGGGAAGAAACTCCCTTGCAGGTTCGATTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGAAACCCTGAATTTCAGCGTGGGCGTACAAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATTGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTACCTGAAGGACTTCCTTTGGCTGTCACCCTCACATTGGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGGTTCGAAGACTGTCTGCTTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGCGATAAGACTGGAACATTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTACACTCATTTGTACTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTCGTGGCTAAGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCAGTCAAGCTGGGAATGAAGTTTGATGTTGTCAAATCAGAGTCCAAAGTTCTCCATGTTGTCCCCTTCAATTCAGAAAAGAAGCGAGGCGGTGTTGCATTAAAGCGGGCCGACTCAGAAGTTTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTATTTGGACTTGAATGGTGAAGTGCACTCGATGGAAGACAATGAGGATTATTTTAAGGCAGCTATTAGTAACATGGCTGCAAACAGTTTGCGCTGTGTTGCGATTGCATATAATTCATATGAGTTGGAGAAGGTTCCAGTAGATGAACAGCGTTTGGATCATTGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGATGGTGTTAAAGAGGCTGTGAAAGTGTGTACTGATGCAGGTGTCAAGGTGCGCATGGTCACTGGAGACAATATACAAACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCAACTGATGATGCTTCTGAGCCTACGGTAATTGAAGGAAAAGCATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCGCCTAATGACAAGCTCTTGCTTGTTCAAGCACTAAGAAAGGGGGGAGAAGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGCACTGAAGTTGCAAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTTATCCAGTTTCAGCTCACTGTAAATGTTGCTGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTTGGTGCTCTAGCATTAGCAACTGAACCACCAACAGACCACCTGATGCATCGGTCCCCTGTTGGGCGAAGGGAACCCCTTATAACTAATATTATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTACTTCTTGTTCTTAACTTCTATGCCACTGATATTCTTCAATTGAATAATGATAGCAAGGAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCATTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAATGTGTTCAGTGGAGTGACGAAAAATCACCTCTTTATGGGAATAGTTGGAACGACATTCGTGCTTCAGATTATCATCGTTGAATTTCTTGGAAAATTTACTTCGACAGTTAAACTTGATGGGAAGCAATGGCTTGTCTGCTTCGCAATCGGCGTTGTGAGCTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCAGAGACCCCATTGGCTAAATACTTTACAAAGCCAGTTGAACGATGCAGAAGGTCACATGGTGCTTGA 3270 42.84 MTSRGSSASANGLLPLTVSTSGRHNDIESGLSSSKSISEEEEEAVSDPFDIDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQTGSSVSPPTSTGDYAISLEHLASLTRDQKISSLQQYGGVKGLSNLLKTNTEKGISGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLVILIIAAVASLALGIKTEGVEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAVLLGRYFTGNTHDANGNPEFQRGRTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSFVLNLLYEGIAQNSTGNVFVAKDGRSIEVTGSPTEKAILSWAVKLGMKFDVVKSESKVLHVVPFNSEKKRGGVALKRADSEVYIHWKGAAEMVLSSCTKYLDLNGEVHSMEDNEDYFKAAISNMAANSLRCVAIAYNSYELEKVPVDEQRLDHWDLPADDLILLAIVGIKDPCRDGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAVECGILNATDDASEPTVIEGKAFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNNDSKEHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNHLFMGIVGTTFVLQIIIVEFLGKFTSTVKLDGKQWLVCFAIGVVSWPLAVVGKLIPVPETPLAKYFTKPVERCRRSHGA 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48935985 48958618 - Lag0003202.1 Lac4g3082 606614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3082 1089 Gene3D - 493 848 IPR023214 -
Lac4g3082 1089 Pfam haloacid dehalogenase-like hydrolase 494 817 - -
Lac4g3082 1089 NCBIfam calcium-translocating P-type ATPase, PMCA-type 143 1067 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Lac4g3082 1089 PRINTS Sodium/potassium-transporting ATPase signature 875 896 - -
Lac4g3082 1089 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Lac4g3082 1089 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Lac4g3082 1089 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Lac4g3082 1089 Pfam Cation transporter/ATPase, N-terminus 153 221 IPR004014 -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 827 839 - -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Lac4g3082 1089 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 9 plasma membrane-type 350 520 - -
Lac4g3082 1089 Gene3D - 506 703 IPR023299 GO:0000166(InterPro)
Lac4g3082 1089 Pfam Cation transporting ATPase, C-terminus 888 1064 IPR006068 -
Lac4g3082 1089 NCBIfam HAD-IC family P-type ATPase 436 519 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac4g3082 1089 NCBIfam HAD-IC family P-type ATPase 770 883 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac4g3082 1089 MobiDBLite consensus disorder prediction 1 34 - -
Lac4g3082 1089 Gene3D - 177 372 - -
Lac4g3082 1089 CDD P-type_ATPase_Ca_PMCA-like 178 936 - -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 506 703 - -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 57 113 - -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 695 848 - -
Lac4g3082 1089 Gene3D - 59 112 - -
Lac4g3082 1089 SFLD Haloacid Dehalogenase 478 855 - -
Lac4g3082 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Lac4g3082 1089 MobiDBLite consensus disorder prediction 1 50 - -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 204 261 - -
Lac4g3082 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1067 IPR023298 -
Lac4g3082 1089 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Lac4g3082 1089 FunFam Calcium-transporting ATPase 251 372 - -
Lac4g3082 1089 SUPERFAMILY HAD-like 494 908 IPR036412 -
Lac4g3082 1089 Pfam E1-E2 ATPase 272 474 - -
Lac4g3082 1089 PANTHER CATION TRANSPORTING ATPASE 117 1067 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Lac4g3082 1089 SFLD p-type atpase 478 855 IPR044492 -
Lac4g3082 1089 SUPERFAMILY Calcium ATPase, transduction domain A 273 369 IPR008250 -
Lac4g3082 1089 Gene3D - 204 1056 - -
Lac4g3082 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 700 IPR023299 GO:0000166(InterPro)
Lac4g3082 1089 FunFam Calcium-transporting ATPase 820 1069 - -
Lac4g3082 1089 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2232 Lac-Chr4:41978222 Lac4g3082 Lac-Chr4:48935985 1.80E-275 dispersed
Lac4g2233 Lac-Chr4:41985824 Lac4g3082 Lac-Chr4:48935985 6.70E-58 dispersed
Lac4g3082 Lac-Chr4:48935985 Lac6g2235 Lac-Chr6:38981690 0.00E+00 dispersed
Lac4g3082 Lac-Chr4:48935985 Lac1g2669 Lac-Chr1:47943291 1.20E-248 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3082 K01537 - csv:101214801 1882.46