Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3088 ATGGACGGTATTCATGCAAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGAGCAGGAACATCATGACTTGCACTATATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAACGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCACGGCGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCCTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCCGTTTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGCGTTCCCTCAATTCCAATAACTAATCAACAAAACGATAGGCATCTCACTGATGAAGCATTTGACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGACAGCTGGAGCACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATCAGTGAGAAGTCTACACCAATGATGCGCCGTGGTCCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGCTGGACAAGCTTCAACCTTTAATAGAAATGAGCTAGCATCCCTCCCACAGATGAACTTGAAACGGGTTAGTCAACGTGTCAAAAATTTAAAATTTCACCCAGATGGCTATGAATCACGCTACCCACCCATCGACAGAGATCCTTGTATCTTCCAAGCTGGCCAATTCATCTTGGCAACAAGGTACTCGCTCACAGAATTCATCTTCCTTTGTACACGGTCTCTTCAATGGTTGGCACTAGCATCAGGGTTGAACCAAACCTGA 1095 45.84 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFDQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNDSWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQAGQASTFNRNELASLPQMNLKRVSQRVKNLKFHPDGYESRYPPIDRDPCIFQAGQFILATRYSLTEFIFLCTRSLQWLALASGLNQT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48998808 49007181 + Lag0003208.1 Lac4g3088 606620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3088 364 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 Gene3D - 221 288 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac4g3088 364 Pfam tify domain 84 112 IPR010399 -
Lac4g3088 364 MobiDBLite consensus disorder prediction 190 224 - -
Lac4g3088 364 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Lac4g3088 364 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lac4g3088 364 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Lac4g3088 364 PANTHER GATA TRANSCRIPTION FACTOR 28 28 283 IPR045280 GO:0006355(InterPro)
Lac4g3088 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 280 - -
Lac4g3088 364 SMART tify_2 78 113 IPR010399 -
Lac4g3088 364 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3088 Lac-Chr4:48998808 Lac6g0994 Lac-Chr6:9064462 3.90E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23797 PF06203 CCT 1.10E-14 CL0281 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3088 - - - 0.0