Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3088 ATGGACGGTATTCATGCAAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGAGCAGGAACATCATGACTTGCACTATATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAACGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGCTCCATCCGACCACGGCGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCCTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTTCAAGCCGTTTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGCGTTCCCTCAATTCCAATAACTAATCAACAAAACGATAGGCATCTCACTGATGAAGCATTTGACCAGGCACTTGCCAGTATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATCGGCCATAACAAGTTGGGAATCAAATGACAGCTGGAGCACTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATCAGTGAGAAGTCTACACCAATGATGCGCCGTGGTCCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGCTGGACAAGCTTCAACCTTTAATAGAAATGAGCTAGCATCCCTCCCACAGATGAACTTGAAACGGGTTAGTCAACGTGTCAAAAATTTAAAATTTCACCCAGATGGCTATGAATCACGCTACCCACCCATCGACAGAGATCCTTGTATCTTCCAAGCTGGCCAATTCATCTTGGCAACAAGGTACTCGCTCACAGAATTCATCTTCCTTTGTACACGGTCTCTTCAATGGTTGGCACTAGCATCAGGGTTGAACCAAACCTGA 1095 45.84 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFDQALASIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSSAITSWESNDSWSTDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQAGQASTFNRNELASLPQMNLKRVSQRVKNLKFHPDGYESRYPPIDRDPCIFQAGQFILATRYSLTEFIFLCTRSLQWLALASGLNQT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48998808 49007181 + Lag0003208.1 Lac4g3088 606620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3088 364 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 Gene3D - 221 288 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac4g3088 364 Pfam tify domain 84 112 IPR010399 -
Lac4g3088 364 MobiDBLite consensus disorder prediction 190 224 - -
Lac4g3088 364 Pfam CCT motif 155 197 IPR010402 GO:0005515(InterPro)
Lac4g3088 364 CDD ZnF_GATA 231 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac4g3088 364 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Lac4g3088 364 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515(InterPro)
Lac4g3088 364 PANTHER GATA TRANSCRIPTION FACTOR 28 28 283 IPR045280 GO:0006355(InterPro)
Lac4g3088 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 280 - -
Lac4g3088 364 SMART tify_2 78 113 IPR010399 -
Lac4g3088 364 SMART GATA_3 225 278 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3088 Lac-Chr4:48998808 Lac6g0994 Lac-Chr6:9064462 3.90E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac12g2249 . 1 181 Tify Gene Family AT4G14713 53.1 4.1e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23797 PF06203 CCT 1.10E-14 CL0281 Lac TF