Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3091 ATGCCGTCCGTCTATGGAGCTCGGTTGACCACCTTTGAGGATTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGAATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTTATCGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCGAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCGGCACTTGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTATATGCTACTGTCTACGAGAATAGTCTAATGGAGCACCATATTGCACTTCCTCCTGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTTAAGGATACTGTTTTGGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCTGTTGCATCTAAGCTTGCAGCTGATACCCCTCTTTTGACTGGGCAGCGTGTTCTTGATGCTCTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTAATGGATTTTCCTCAATTGACAATGACATTACCCGATGGCCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCTGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGGAAAGTGAAATGTCTTGGTGGGCCGGAAAGAACTGGTAGTGTTACCATTGTTGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCGGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAACACTTCCCATCTGTAAACTGGCTGATTTCATACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATTAATATCAGGACGAAGGCTCGAGAAGTTCTCCAGAGGGAAGATGACCTCAATGAGATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTAGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAAAAGTTCGAGGATCCAGCTGAAGGTGAAGCAGTTCTTATTGAGAAATTTAAGAAGTTACATGAGGATCTGACAAATGGTTTCCGGGCTCTCGAGGATGAAACTCGGTAG 1872 44.18 MPSVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVYENSLMEHHIALPPDSMGKITYVAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAVLIEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 49026022 49034204 - Lag0003211.1 Lac4g3091 606623

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3091 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Lac4g3091 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac4g3091 623 Coils Coil 601 621 - -
Lac4g3091 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Lac4g3091 623 Gene3D - 134 205 - -
Lac4g3091 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 10 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Lac4g3091 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Lac4g3091 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Lac4g3091 623 Gene3D - 20 89 IPR023366 -
Lac4g3091 623 FunFam V-type proton ATPase catalytic subunit A 194 457 - -
Lac4g3091 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Lac4g3091 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Lac4g3091 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Lac4g3091 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Lac4g3091 623 Gene3D - 459 611 IPR024034 -
Lac4g3091 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Lac4g3091 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Lac4g3091 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Lac4g3091 623 CDD V_A-ATPase_A 88 460 - -
Lac4g3091 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Lac4g3091 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Lac4g3091 623 Gene3D - 91 457 IPR027417 -
Lac4g3091 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3091 K02145 - - csv:101216234 1207.2
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac4g1440 . 6 829 Primary Pumps ATPases(2) AT2G21410 67.8 0.0e+00 1110.5
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.4 4.7e-298 1021.1
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT2G21410 78.3 3.1e-241 832.4
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G21410 69.0 1.6e-101 368.2
Lac4g1440 . 8 829 Primary Pumps ATPases(2) AT4G39080 68.6 0.0e+00 1108.6
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.8 2.3e-297 1018.8
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT4G39080 78.1 1.7e-239 826.6
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT4G39080 70.1 3.7e-101 367.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0480 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.1e-66 249.6
Lac6g0479 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.7e-66 249.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT1G75630 78.5 5.9e-53 204.9
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac6g0480 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.8e-52 202.6
Lac6g0479 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 200.7
Lac2g0915 . 9 103 Primary Pumps ATPases(2) AT1G19910 98.9 7.3e-38 154.1
Lac2g0627 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.9e-71 266.5
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.2e-71 265.8
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0627 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 5.8e-75 278.1
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 5.0e-71 265.0
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1682.5
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac7g2667 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1328.2
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G76030 96.7 3.0e-268 921.4
Lac8g2013 . 1 376 Primary Pumps ATPases(2) AT1G12840 84.0 1.5e-182 636.3
Lac9g1002 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 3.7e-116 415.2
Lac1g2331 . 3 432 Primary Pumps ATPases(2) AT3G42050 72.4 2.7e-183 639.0
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac3g1976 . 6 488 Primary Pumps ATPases(2) AT4G38510 96.3 2.7e-269 924.9
Lac8g0070 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 2.9e-65 245.7
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 2.1e-266 915.2
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.4e-192 666.8
Lac8g0070 . 1 225 Primary Pumps ATPases(2) AT4G11150 74.8 1.1e-84 310.5
Lac4g3091 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1175.6
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G76030 96.7 3.0e-268 921.4
Lac3g1976 . 6 488 Primary Pumps ATPases(2) AT4G38510 96.3 2.7e-269 924.9
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 2.1e-266 915.2
Lac8g2013 . 1 376 Primary Pumps ATPases(2) AT1G12840 84.0 1.5e-182 636.3
Lac9g1002 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 3.7e-116 415.2
Lac8g0070 . 1 225 Primary Pumps ATPases(2) AT4G11150 74.8 1.1e-84 310.5
Lac8g0070 . 1 226 Primary Pumps ATPases(2) AT3G08560 69.6 2.6e-76 282.7
Lac8g0070 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 2.9e-65 245.7
Lac1g2331 . 3 432 Primary Pumps ATPases(2) AT3G42050 72.4 2.7e-183 639.0
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac4g1440 . 6 829 Primary Pumps ATPases(2) AT2G21410 67.8 0.0e+00 1110.5
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.4 4.7e-298 1021.1
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT2G21410 78.3 3.1e-241 832.4
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G21410 69.0 1.6e-101 368.2
Lac4g1440 . 8 829 Primary Pumps ATPases(2) AT4G39080 68.6 0.0e+00 1108.6
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.8 2.3e-297 1018.8
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT4G39080 78.1 1.7e-239 826.6
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT4G39080 70.1 3.7e-101 367.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0480 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.8e-52 202.6
Lac6g0479 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 200.7
Lac2g0915 . 9 103 Primary Pumps ATPases(2) AT1G19910 98.9 7.3e-38 154.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0480 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.1e-66 249.6
Lac6g0479 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.7e-66 249.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT1G75630 78.5 5.9e-53 204.9
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac2g0627 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 5.8e-75 278.1
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 5.0e-71 265.0
Lac2g0627 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.9e-71 266.5
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.2e-71 265.8
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 8.1e-199 690.3
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.4e-192 666.8
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lac7g2667 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1328.2
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1682.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37