Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac4g3104 | ATGAAGAAGAAGGGCGGCGGCGGCGGACTATCGTCGGTGAGAAGGGGAAGGGGAGGAAGGGATTTTGGGGGGACGGCGAAGGTGGTGGTGAAGGATGGCGAAGGAGGCGACAAAGGGCTGCGGCGTAAAGTTCAGGAGGGGCTCGAGCCCCCCCGGGCCTACTGTAGCTCCGCCGCTGCATCAACTCATACATTTATGTTGCGACATCATATTGTTCGAAGCCTTATGTTCGTCTTCGAAGTTGGTGTTTGTTGTTCGTCAATCGCCACCGTAACTCGGAGCAGAACCCATCGCCACCGTAAAAGTATACAAGTCAATTGCCAACTTAAACGCCGTCGTCGTTTACCCAGACTCTTCCATCGGTTACGTCGTGATCTGGAGACCCGTGAGAAAACAGCTGCGACCCACGCGACCAGCGACCCTGCAAACTCGACCCGTGACCTCGCAAACACTTGCCGCTGCAAGTCACCGCCGTCGATCAATCCAACGTCGTCGTCTTCTCACATTCTCTCTCCAATCGATTCTCAGCACACCGTTGTTCTCTCTCTGGTCCTTGCATACATATCGAACCCTCGCCGGCAACCACCTGATCAGAACCCTCGCCGCCGACCAGAACCCTTGCGTCGACTTCAAACGGCGCATCCTTCTTCCGGTTTGAGTCCTCGGGATCAGGAATCGGAGAAGATGATTGGGAGTGCTAGGATGCTTGATGGCCTTTACTACTTTGATGAAGGTTCTAGTGATGTTTGGGGTGCTTCTAAAATTAGGACTCATAGTGGGAAAAGATGGTTTGTTACTTTTATTGACGACCATACTCGTTCTGTGTACTTAATGGAAAAGAAATCTGAGTCCTTTGGTGCCAAGTATAGAAACTTCTCAATCAGGGGAGAAATACTACATAACAATCCTACTGATCAAGTTCCTGAGTTTAAGTTTTATACTAGAAGAAAATTCAATCAGAGGAACCAAGACCAGATAGTTGATCCTTCACAGAACCAATCTAAGACTCTGATGACTGAAACTAGAGAACCTGAGTTGTCAAAAGATAAGAAACCAGTGGGTTGTAAATGGGTGTTCACCATAAAATGCAGTGCAAATGGTAGTATTGAGAGATATAAGGCCAGACTAGTAGCTAAAGGGTTCACCCAAACATATGAGATTGATTGTCAGGAAATGTTTGCCCCAGTTGCTAAAATTAACTCTATTCGAGTGCTTTTGTCTCTTGCTATCAATTCAGATTGGTCACTTTACCAACTTGACGTAAAAAATGCATTTCTGAATGGCGATCTCGAGGAAGAGGTTGCAGAAACTCCAGTTGAACCCAATCTAAAGTTACAAGTAGCAAAAGAGGACAAGGAACGATATCAGAGACTTGTTGGAAGATTGATTTATCTATCTCATACGCGTCGTGATATTGCATATGCAGTAAGCATGATAGAAGTTCATACTGATGCAGACTGGGCAGGAAGTACTATAGATAGAAGATCTACCTCTGGTTATTGTTCCTTTGTTGGAGGGAATTTGGTTACTTGGAGAAGTAAAAAACAAAATGTGGTGGCTAGGAGCAGTGCTGAAGCAGAATTTAGAGCGTTAATGGAATTTGTGAGGTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTCTTTGCTCATGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTCTTTGCTCAGTTGGGTGGTGGTATTTATACAAAAGCTGCTGATGTTGGAGCAGACCTCGTTGGAAAAGTTGAGCAGGGGATACCGGAGGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGACTGTGCTGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTGTTTCCGCTAGTAGTACATTCCTTTGATCTGGTAATTTCATCAATTGGCATTCTCTCTATCAGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATCATTTTGGCTGTTCTAACATTTGGTGTGTCTACCCGGTGGTTGCTTCACACTGAACAAGCACCTTCTGCATGGCTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTATATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTTCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACGAACATTATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCGCTCCCTGTTCTTGTTATTAGTGTATCTATTGTTTCGGCATTCTGGTTGGGTCACACATCAGGACTTGTGGATGAAGCTGGAAATCCAACAGGTGGGCTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTTGCATCCTTCCTACTTTTTAGTGCTTATATGGACGAGGTAGCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTTATTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAGTATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATTATTTCTCCTATGTTAGTTGAGCAACAACACATAATTGAAGCTGTGGTTTTCATGCTTTTGAAAAATATCCTTATGGCTCTGCTGTACACGGCTCGGAATCCAAAGTTTGGATGGCGCAATGTGATTCATAATTTTGATGATTTATGCTTTCTGTTTAGAATATTGGGACACTATACTGAGCATCCGCTTCTAGGGGCCAAGGTTGTCGCAGCGATGCTGATGTTTGCGACAGTTTCTGGTATTCTCATGGCCCTTTTTCTGAACACGGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACGGGGGTTCTTGGAGGCAAAGGTAGTGATTGTCATAAAGCAGCCGTAACTGGGGACACCGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATAAAAATGCTCGCAACCATAACGCTGGTCATGGCCCCGATCTTTCTGTAA | 3468 | 45.56 | MKKKGGGGGLSSVRRGRGGRDFGGTAKVVVKDGEGGDKGLRRKVQEGLEPPRAYCSSAAASTHTFMLRHHIVRSLMFVFEVGVCCSSIATVTRSRTHRHRKSIQVNCQLKRRRRLPRLFHRLRRDLETREKTAATHATSDPANSTRDLANTCRCKSPPSINPTSSSSHILSPIDSQHTVVLSLVLAYISNPRRQPPDQNPRRRPEPLRRLQTAHPSSGLSPRDQESEKMIGSARMLDGLYYFDEGSSDVWGASKIRTHSGKRWFVTFIDDHTRSVYLMEKKSESFGAKYRNFSIRGEILHNNPTDQVPEFKFYTRRKFNQRNQDQIVDPSQNQSKTLMTETREPELSKDKKPVGCKWVFTIKCSANGSIERYKARLVAKGFTQTYEIDCQEMFAPVAKINSIRVLLSLAINSDWSLYQLDVKNAFLNGDLEEEVAETPVEPNLKLQVAKEDKERYQRLVGRLIYLSHTRRDIAYAVSMIEVHTDADWAGSTIDRRSTSGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRALMEFVRCLFSLWVMVLELLSLPSLLMPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPIEDPMTILQRGYSVTIILAVLTFGVSTRWLLHTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGHTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVAAFAHEPFKQVDIAIPEVFIGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMLVEQQHIIEAVVFMLLKNILMALLYTARNPKFGWRNVIHNFDDLCFLFRILGHYTEHPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL | 1155 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 49183961 | 49197201 | - | Lag0003224.1 | Lac4g3104 | 606636 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac4g3104 | 1155 | Pfam | Inorganic H+ pyrophosphatase | 1064 | 1150 | IPR004131 | GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro) | |
Lac4g3104 | 1155 | Pfam | Inorganic H+ pyrophosphatase | 549 | 1030 | IPR004131 | GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro) | |
Lac4g3104 | 1155 | CDD | RNase_HI_RT_Ty1 | 480 | 531 | - | - | |
Lac4g3104 | 1155 | MobiDBLite | consensus disorder prediction | 135 | 169 | - | - | |
Lac4g3104 | 1155 | SUPERFAMILY | DNA/RNA polymerases | 345 | 523 | IPR043502 | - | |
Lac4g3104 | 1155 | MobiDBLite | consensus disorder prediction | 190 | 227 | - | - | |
Lac4g3104 | 1155 | Hamap | Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. | 418 | 1155 | IPR004131 | GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro) | |
Lac4g3104 | 1155 | MobiDBLite | consensus disorder prediction | 126 | 169 | - | - | |
Lac4g3104 | 1155 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lac4g3104 | 1155 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 346 | 435 | IPR013103 | - | |
Lac4g3104 | 1155 | PANTHER | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP | 554 | 1154 | IPR004131 | GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g3104 | Lac-Chr4:49183961 | Lac5g0001 | Lac-Chr5:52216 | 2.50E-305 | dispersed | |
Lac4g3104 | Lac-Chr4:49183961 | Lac6g1522 | Lac-Chr6:19576326 | 5.30E-90 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac4g3104 | K23025 | - | csv:101217198 | 1023.08 |