Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g3104 ATGAAGAAGAAGGGCGGCGGCGGCGGACTATCGTCGGTGAGAAGGGGAAGGGGAGGAAGGGATTTTGGGGGGACGGCGAAGGTGGTGGTGAAGGATGGCGAAGGAGGCGACAAAGGGCTGCGGCGTAAAGTTCAGGAGGGGCTCGAGCCCCCCCGGGCCTACTGTAGCTCCGCCGCTGCATCAACTCATACATTTATGTTGCGACATCATATTGTTCGAAGCCTTATGTTCGTCTTCGAAGTTGGTGTTTGTTGTTCGTCAATCGCCACCGTAACTCGGAGCAGAACCCATCGCCACCGTAAAAGTATACAAGTCAATTGCCAACTTAAACGCCGTCGTCGTTTACCCAGACTCTTCCATCGGTTACGTCGTGATCTGGAGACCCGTGAGAAAACAGCTGCGACCCACGCGACCAGCGACCCTGCAAACTCGACCCGTGACCTCGCAAACACTTGCCGCTGCAAGTCACCGCCGTCGATCAATCCAACGTCGTCGTCTTCTCACATTCTCTCTCCAATCGATTCTCAGCACACCGTTGTTCTCTCTCTGGTCCTTGCATACATATCGAACCCTCGCCGGCAACCACCTGATCAGAACCCTCGCCGCCGACCAGAACCCTTGCGTCGACTTCAAACGGCGCATCCTTCTTCCGGTTTGAGTCCTCGGGATCAGGAATCGGAGAAGATGATTGGGAGTGCTAGGATGCTTGATGGCCTTTACTACTTTGATGAAGGTTCTAGTGATGTTTGGGGTGCTTCTAAAATTAGGACTCATAGTGGGAAAAGATGGTTTGTTACTTTTATTGACGACCATACTCGTTCTGTGTACTTAATGGAAAAGAAATCTGAGTCCTTTGGTGCCAAGTATAGAAACTTCTCAATCAGGGGAGAAATACTACATAACAATCCTACTGATCAAGTTCCTGAGTTTAAGTTTTATACTAGAAGAAAATTCAATCAGAGGAACCAAGACCAGATAGTTGATCCTTCACAGAACCAATCTAAGACTCTGATGACTGAAACTAGAGAACCTGAGTTGTCAAAAGATAAGAAACCAGTGGGTTGTAAATGGGTGTTCACCATAAAATGCAGTGCAAATGGTAGTATTGAGAGATATAAGGCCAGACTAGTAGCTAAAGGGTTCACCCAAACATATGAGATTGATTGTCAGGAAATGTTTGCCCCAGTTGCTAAAATTAACTCTATTCGAGTGCTTTTGTCTCTTGCTATCAATTCAGATTGGTCACTTTACCAACTTGACGTAAAAAATGCATTTCTGAATGGCGATCTCGAGGAAGAGGTTGCAGAAACTCCAGTTGAACCCAATCTAAAGTTACAAGTAGCAAAAGAGGACAAGGAACGATATCAGAGACTTGTTGGAAGATTGATTTATCTATCTCATACGCGTCGTGATATTGCATATGCAGTAAGCATGATAGAAGTTCATACTGATGCAGACTGGGCAGGAAGTACTATAGATAGAAGATCTACCTCTGGTTATTGTTCCTTTGTTGGAGGGAATTTGGTTACTTGGAGAAGTAAAAAACAAAATGTGGTGGCTAGGAGCAGTGCTGAAGCAGAATTTAGAGCGTTAATGGAATTTGTGAGGTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTCTTTGCTCATGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTCGTTGCCCTCTTTGCTCAGTTGGGTGGTGGTATTTATACAAAAGCTGCTGATGTTGGAGCAGACCTCGTTGGAAAAGTTGAGCAGGGGATACCGGAGGATGATCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGACTGTGCTGCTCGAGGTGCAGATCTTTTTGAAAGCATTGCTGCTGAAATCATTAGTGCCATGATACTTGGGGGAACAATGGCTCAACGCTGTAAAATTGAAGATCCATCTGGTTTCATTTTGTTTCCGCTAGTAGTACATTCCTTTGATCTGGTAATTTCATCAATTGGCATTCTCTCTATCAGGAGGGGTACTCGTGAATCTGGTGTGAAGAGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATATTCTGTCACTATCATTTTGGCTGTTCTAACATTTGGTGTGTCTACCCGGTGGTTGCTTCACACTGAACAAGCACCTTCTGCATGGCTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTATATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCTGTTCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACGAACATTATTGCTGGAGTCAGCTTGGGCCTGGAATCAACAGCGCTCCCTGTTCTTGTTATTAGTGTATCTATTGTTTCGGCATTCTGGTTGGGTCACACATCAGGACTTGTGGATGAAGCTGGAAATCCAACAGGTGGGCTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTTGCATCCTTCCTACTTTTTAGTGCTTATATGGACGAGGTAGCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTTATTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATAATGGACTATACGGAGAAACCAGAGTATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATTATTTCTCCTATGTTAGTTGAGCAACAACACATAATTGAAGCTGTGGTTTTCATGCTTTTGAAAAATATCCTTATGGCTCTGCTGTACACGGCTCGGAATCCAAAGTTTGGATGGCGCAATGTGATTCATAATTTTGATGATTTATGCTTTCTGTTTAGAATATTGGGACACTATACTGAGCATCCGCTTCTAGGGGCCAAGGTTGTCGCAGCGATGCTGATGTTTGCGACAGTTTCTGGTATTCTCATGGCCCTTTTTCTGAACACGGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACGGGGGTTCTTGGAGGCAAAGGTAGTGATTGTCATAAAGCAGCCGTAACTGGGGACACCGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATAAAAATGCTCGCAACCATAACGCTGGTCATGGCCCCGATCTTTCTGTAA 3468 45.56 MKKKGGGGGLSSVRRGRGGRDFGGTAKVVVKDGEGGDKGLRRKVQEGLEPPRAYCSSAAASTHTFMLRHHIVRSLMFVFEVGVCCSSIATVTRSRTHRHRKSIQVNCQLKRRRRLPRLFHRLRRDLETREKTAATHATSDPANSTRDLANTCRCKSPPSINPTSSSSHILSPIDSQHTVVLSLVLAYISNPRRQPPDQNPRRRPEPLRRLQTAHPSSGLSPRDQESEKMIGSARMLDGLYYFDEGSSDVWGASKIRTHSGKRWFVTFIDDHTRSVYLMEKKSESFGAKYRNFSIRGEILHNNPTDQVPEFKFYTRRKFNQRNQDQIVDPSQNQSKTLMTETREPELSKDKKPVGCKWVFTIKCSANGSIERYKARLVAKGFTQTYEIDCQEMFAPVAKINSIRVLLSLAINSDWSLYQLDVKNAFLNGDLEEEVAETPVEPNLKLQVAKEDKERYQRLVGRLIYLSHTRRDIAYAVSMIEVHTDADWAGSTIDRRSTSGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRALMEFVRCLFSLWVMVLELLSLPSLLMPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKSPIEDPMTILQRGYSVTIILAVLTFGVSTRWLLHTEQAPSAWLNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGHTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVAAFAHEPFKQVDIAIPEVFIGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMLVEQQHIIEAVVFMLLKNILMALLYTARNPKFGWRNVIHNFDDLCFLFRILGHYTEHPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL 1155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 49183961 49197201 - Lag0003224.1 Lac4g3104 606636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g3104 1155 Pfam Inorganic H+ pyrophosphatase 1064 1150 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac4g3104 1155 Pfam Inorganic H+ pyrophosphatase 549 1030 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac4g3104 1155 CDD RNase_HI_RT_Ty1 480 531 - -
Lac4g3104 1155 MobiDBLite consensus disorder prediction 135 169 - -
Lac4g3104 1155 SUPERFAMILY DNA/RNA polymerases 345 523 IPR043502 -
Lac4g3104 1155 MobiDBLite consensus disorder prediction 190 227 - -
Lac4g3104 1155 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 418 1155 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Lac4g3104 1155 MobiDBLite consensus disorder prediction 126 169 - -
Lac4g3104 1155 MobiDBLite consensus disorder prediction 1 28 - -
Lac4g3104 1155 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 346 435 IPR013103 -
Lac4g3104 1155 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 554 1154 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3104 Lac-Chr4:49183961 Lac5g0001 Lac-Chr5:52216 2.50E-305 dispersed
Lac4g3104 Lac-Chr4:49183961 Lac6g1522 Lac-Chr6:19576326 5.30E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g3104 K23025 - csv:101217198 1023.08