Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0013 ATGGTTCCGGCTAGCTCTCCAGCGGATCTTGTGCAGACAGAGTGCTTGAAGGTACCCTCGTCCGAGTTCTCTAACTCACTTCTCTCCACCATCGATGTCGTGCGACAGGTTATGGCCATTTTCTCTCCATTCAGTAAATTACTGGGTGATTTACGACTTTCAACCGCCATTTCCGACTGCCTCGATTTGCTTGACTCTTCTGCCGACCAGTTGAGCTGGTCCCTCTCCGCCACCCAAAATCCCAAGGCTAAAAACAACAGCACCGGAGATCTGAGTTCTGATCTAAAGACGTGGCTGAGCGCTGCAGTCGTTAATCCAGAAACATGCATGGATGGATTCGAGGGCACCAATAGCATTGTCAAAGGTCTAGTATCCGCAGGTATTAACCAGTTAACTTCACAGGTCTATGACCTGCTTTCCATGGTAAAATCAATCCCCAATCAGCCGGCTCGAAAATTGAAGAGCGAGTTTCCTTCCTGGGTCAAATCTGAGGACCGGAACCTGCTGCAACTAAATGACTTAGCCGCCGATGCCACAGTGGCCACCGATGGGACTGGGGATTTCACCAATGTGATGGATGCGGTACTAGCGGCCCCCGACAATAGCATGCGACGTTATGTCATATACATAAAGAGGGGTGTCTATTTCGAGAACGTGGAGATCAAGAAGAAGAAGTGGCATCTCATGATGATTGGAGATGGAATAGATTCCACCATCATATCGGGTAATCGGAGTTTTATAGACGGTTGGACCACATTCCGCTCAGCGACCTTCGCTGTGAGTGGAAGAGGATTCATAGCACGGGACATAACATTCGAGAATACTGCAGGACCAGAGAAACATCAAGCGGTGGCACTTAGATCCGACTCCGATCTGTCGGTGTTTTTTAGATGTCGTATTAGAGGCTTCCAAGACACGCTGTATACGCACACCATGCGCCAATTCTACCGCGAGTGCCAGATCAGTGGCACTGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAACTGCAGCATCCTCGCGAAGAAGGGTCTTCCCAACCAAAAAAACACCATCACTGCTCAGGGCCGGAAAGACCCAAACCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCGGATTCAGACCTTCAACCCTCGGTTAACACTACAGCTACATACCTTGGGAGACCATGGAAGGAATATTCGAGAACCATTATCATGCAGTCATACATGAGCGATGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGGTGAATTTGCATTGAATACACTGTTCTACGCTGAGTTTATGAATTATGGACCGGGGGCAGGATTGGCCAAGCGTGTCCATTGGCCGGGTTACCGCAGACTGAATCAAACGAGTGACGCTACTAACTTCACCGTGGCTCAATTCATTGAAGGAAACCTGTGGTTGCCGTCCACGGGTGTCAAATACACTGCAGGCTTGGGAGCTAATTAA 1476 49.32 MVPASSPADLVQTECLKVPSSEFSNSLLSTIDVVRQVMAIFSPFSKLLGDLRLSTAISDCLDLLDSSADQLSWSLSATQNPKAKNNSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIVKGLVSAGINQLTSQVYDLLSMVKSIPNQPARKLKSEFPSWVKSEDRNLLQLNDLAADATVATDGTGDFTNVMDAVLAAPDNSMRRYVIYIKRGVYFENVEIKKKKWHLMMIGDGIDSTIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFFRCRIRGFQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLQPSVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNGEFALNTLFYAEFMNYGPGAGLAKRVHWPGYRRLNQTSDATNFTVAQFIEGNLWLPSTGVKYTAGLGAN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 155912 158069 - Lag0017097.1 Lac5g0013 606655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0013 491 Gene3D - 171 488 IPR012334 -
Lac5g0013 491 PANTHER PECTINESTERASE 50 479 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac5g0013 491 SUPERFAMILY Pectin lyase-like 175 487 IPR011050 -
Lac5g0013 491 Pfam Pectinesterase 177 474 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g0013 491 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 145 IPR035513 -
Lac5g0013 491 FunFam Pectinesterase 171 488 - -
Lac5g0013 491 Pfam Plant invertase/pectin methylesterase inhibitor 44 141 IPR006501 GO:0004857(InterPro)
Lac5g0013 491 SMART PMEI_2 6 145 IPR006501 GO:0004857(InterPro)
Lac5g0013 491 Gene3D Invertase/pectin methylesterase inhibitor family protein 9 148 IPR035513 -
Lac5g0013 491 CDD PMEI-like_4 1 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2867 Lac-Chr3:45713742 Lac5g0013 Lac-Chr5:155912 2.90E-131 dispersed
Lac5g0013 Lac-Chr5:155912 Lac5g3038 Lac-Chr5:48276947 1.60E-120 dispersed
Lac5g0013 Lac-Chr5:155912 Lac11g0154 Lac-Chr11:1433242 2.70E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0013 K01051 - csv:116402691 876.7