Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0024 ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGGGAAGGCAACCAAGTTAATTCAAGAGATGTGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATTGATTCACTTGAGACTCATGTACAGGACATTGTACCTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCTTGGATCATGATCAAGAGTTGGATAAGGCTGATGCAGAACCTGTGTCTGATGTCAAGACTGGGCCTGATGCGTTGCCCCCAGGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGCTCAATCCTCCATGGATGCCAAATCTGAGGCCTTTGTGATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCTTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTTTTAAAGCTGAAACAGACAATGCCATAGAATTGAAGGTCAATGAAGATGGTGTTACTACACCTCATAATGGGCATTCGAACATTAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTTAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCAGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACTACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTGTTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGATCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAGCAACTTAAAAGCATGGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATTCCATGAAATCAGCACGCACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTTCTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGTTTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCATCAAGAATTGACCCACATCAGACATCTGCCGTTGTGACCTTACATGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1536 44.01 MCDAKEKQESAQDVPVALREGNQVNSRDVLHDSLPLPAEATPNSCENKIDSLETHVQDIVPPEDNLDKPTIPQQSNQDSANSLPLDHDQELDKADAEPVSDVKTGPDALPPGELGLDAATSNTHLETAQSSMDAKSEAFVMPETKTGSLDDASTASHDEPVTPHPVSSCFKAETDNAIELKVNEDGVTTPHNGHSNINHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSVENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSMGILKRKKPSYMEHSMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 265020 271791 + Lag0017108.1 Lac5g0024 606666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0024 511 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 62 509 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lac5g0024 511 MobiDBLite consensus disorder prediction 85 100 - -
Lac5g0024 511 FunFam AT-rich interactive domain-containing protein 3 403 511 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 146 168 - -
Lac5g0024 511 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
Lac5g0024 511 SMART ARID_2 214 304 - -
Lac5g0024 511 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Lac5g0024 511 MobiDBLite consensus disorder prediction 315 338 - -
Lac5g0024 511 Pfam Hsp20/alpha crystallin family 428 508 IPR002068 -
Lac5g0024 511 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 411 511 IPR002068 -
Lac5g0024 511 CDD ARID 222 304 - -
Lac5g0024 511 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 1 118 - -
Lac5g0024 511 SUPERFAMILY ARID-like 211 318 IPR036431 GO:0003677(InterPro)
Lac5g0024 511 Gene3D - 397 511 IPR008978 -
Lac5g0024 511 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Lac5g0024 511 SUPERFAMILY HSP20-like chaperones 422 507 IPR008978 -
Lac5g0024 511 MobiDBLite consensus disorder prediction 68 84 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 315 332 - -
Lac5g0024 511 CDD ACD_sHsps-like 426 506 - -
Lac5g0024 511 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0024 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0048 Lac-Chr2:391582 Lac5g0024 Lac-Chr5:265020 3.90E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23799 PF00011 HSP20 8.40E-06 CL0190 Lac TR