Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0024 ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAAGATGTTCCAGTTGCTTTAAGGGAAGGCAACCAAGTTAATTCAAGAGATGTGCTCCATGATTCTCTCCCTTTGCCAGCTGAGGCAACTCCGAACTCTTGTGAAAATAAGATTGATTCACTTGAGACTCATGTACAGGACATTGTACCTCCTGAGGATAATTTAGATAAACCTACGATTCCTCAGCAATCAAATCAAGATTCTGCGAATTCACTTCCCTTGGATCATGATCAAGAGTTGGATAAGGCTGATGCAGAACCTGTGTCTGATGTCAAGACTGGGCCTGATGCGTTGCCCCCAGGGGAGTTGGGTCTAGATGCTGCTACTTCCAACACTCACCTGGAAACCGCTCAATCCTCCATGGATGCCAAATCTGAGGCCTTTGTGATGCCTGAAACTAAAACTGGTTCTCTTGATGATGCTTCAACAGCAAGTCATGATGAACCTGTAACTCCCCATCCAGTGTCATCTTGTTTTAAAGCTGAAACAGACAATGCCATAGAATTGAAGGTCAATGAAGATGGTGTTACTACACCTCATAATGGGCATTCGAACATTAATCACTCATTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTTAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCAGTGACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACTACAGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGCGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTGTTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCTGCACGTGCCATGCAGGGTTGGCACTCACAACGTCTTCTGGGAAATGGTGAAGTTAGTGATCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAGCAACTTAAAAGCATGGGTATTCTTAAACGTAAGAAACCATCTTACATGGAGCATTCCATGAAATCAGCACGCACAAAATCATCAAAACCACAGTTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTTCTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCAGGACGTTTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCATCAAGAATTGACCCACATCAGACATCTGCCGTTGTGACCTTACATGGACAGTTGTTTGTTCGCGTTCCATTTGAACAGTTGGAATGA 1536 44.01 MCDAKEKQESAQDVPVALREGNQVNSRDVLHDSLPLPAEATPNSCENKIDSLETHVQDIVPPEDNLDKPTIPQQSNQDSANSLPLDHDQELDKADAEPVSDVKTGPDALPPGELGLDAATSNTHLETAQSSMDAKSEAFVMPETKTGSLDDASTASHDEPVTPHPVSSCFKAETDNAIELKVNEDGVTTPHNGHSNINHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSVENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSMGILKRKKPSYMEHSMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 265020 271791 + Lag0017108.1 Lac5g0024 606666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0024 511 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 62 509 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)
Lac5g0024 511 MobiDBLite consensus disorder prediction 85 100 - -
Lac5g0024 511 FunFam AT-rich interactive domain-containing protein 3 403 511 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 146 168 - -
Lac5g0024 511 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
Lac5g0024 511 SMART ARID_2 214 304 - -
Lac5g0024 511 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Lac5g0024 511 MobiDBLite consensus disorder prediction 315 338 - -
Lac5g0024 511 Pfam Hsp20/alpha crystallin family 428 508 IPR002068 -
Lac5g0024 511 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 411 511 IPR002068 -
Lac5g0024 511 CDD ARID 222 304 - -
Lac5g0024 511 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 1 118 - -
Lac5g0024 511 SUPERFAMILY ARID-like 211 318 IPR036431 GO:0003677(InterPro)
Lac5g0024 511 Gene3D - 397 511 IPR008978 -
Lac5g0024 511 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Lac5g0024 511 SUPERFAMILY HSP20-like chaperones 422 507 IPR008978 -
Lac5g0024 511 MobiDBLite consensus disorder prediction 68 84 - -
Lac5g0024 511 MobiDBLite consensus disorder prediction 315 332 - -
Lac5g0024 511 CDD ACD_sHsps-like 426 506 - -
Lac5g0024 511 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0048 Lac-Chr2:391582 Lac5g0024 Lac-Chr5:265020 3.90E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23799 PF00011 HSP20 8.40E-06 CL0190 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0024 - - - 0.0