Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0026 ATGTCGTCGCAACAATCGGCTTTGGATTCTTCAGCTTTTGGCACACAAACTTCGTCCAATCCGATTCCCACGGAAGCTACTCCGGCTCCCTTGGATCCTCCCTCCACCTCCTCCACCATCTCTGAGTCTGAAGAAAATCCCTGCACATCATCTTCACCTTCCTCCACCCCACCTCCGATTCACTTGCCTCTCTCTTGGCCTCCCGATGCCACCCTTTCCCTCCAGTGGATTCACCATCTCATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCGAGTTTCCTTCCGTCCTTCCCGTCTCCGTTTTCGATGCTCTAGTCCTCACTGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAGAATCCTCGAAGACTCAGTCGCCAGCAGCGACTCCACTGTTGTCGTTGTCGGAGACATCCACGGTCAATTTCACGATCTCCTCTTTCTCCTGCAGGATGCTGGCTTTCCATCTGAAAACCGTTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACATTTTTGCTTTTATTGGCTTGGAAGGTGTTCATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAAGTGCTAATCAAGTACGGAGACAAAGGTAAGCATGTCTATCGGAAGTGTTTGGGATGTTTCGAAGGGTTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCGTATCAGTTCCTTCATCTAAAAGATCAAAAGGGAAAAAAAATCGTAGAATAAGCTTAAATCCTGAAGCCAACGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCTGGTGATGTTTTGTGGTCTGATCCTTCGATGAATCCTGGTCTCTCCCCAAATAGAGAGAGAGGCATAGGTCTCTTGTGGGGTCCCGATTGCACTGAAGAATTCTTGAAAAATTCGATCTGA 1062 47.83 MSSQQSALDSSAFGTQTSSNPIPTEATPAPLDPPSTSSTISESEENPCTSSSPSSTPPPIHLPLSWPPDATLSLQWIHHLIAAFDWSSKNLPPSEFPSVLPVSVFDALVLTASKILHKEPNCLRILEDSVASSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLIKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSVSVPSSKRSKGKKNRRISLNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNRERGIGLLWGPDCTEEFLKNSI 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 287811 289196 - Lag0017110.1 Lac5g0026 606668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0026 353 Gene3D - 95 352 IPR029052 -
Lac5g0026 353 ProSitePatterns Serine/threonine specific protein phosphatases signature. 200 205 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 SUPERFAMILY Metallo-dependent phosphatases 96 351 IPR029052 -
Lac5g0026 353 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 40 351 IPR051134 -
Lac5g0026 353 Pfam Calcineurin-like phosphoesterase 136 351 IPR004843 GO:0016787(InterPro)
Lac5g0026 353 SMART pp2a_7 110 353 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 MobiDBLite consensus disorder prediction 1 62 - -
Lac5g0026 353 MobiDBLite consensus disorder prediction 1 51 - -
Lac5g0026 353 PRINTS Serine/threonine phosphatase family signature 199 223 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 PRINTS Serine/threonine phosphatase family signature 166 193 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 PRINTS Serine/threonine phosphatase family signature 236 262 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 PRINTS Serine/threonine phosphatase family signature 296 323 IPR006186 GO:0016787(InterPro)
Lac5g0026 353 PRINTS Serine/threonine phosphatase family signature 136 163 IPR006186 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0026 Lac-Chr5:287811 Lac8g2499 Lac-Chr8:42882799 2.20E-63 dispersed
Lac5g0026 Lac-Chr5:287811 Lac7g0595 Lac-Chr7:4756646 1.80E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0026 K04460 - csv:116402529 593.964