Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0036 | ATGACTCGCTATTTTACGGCTCTCGCGGCTAATACTTCGTCGGCGTCGGCGCCTCCCCCAGAGGCGGTGGCGCTGGAGTCCGACTTCGTCGTGATTCTCGCGGCGCTGCTCTGTGCCCTAATTTGTATGGTAGGGCTCATAGCGGTGGCTCGGTGCGCCTGGCTCCGGCGGGCCGGTGCCGGTGCCGGTGCTGCTGCAGCTAATCAGGCGTCTGCGAATAGGGGATTGAAGAAGAAGATCCTGCAGTCGCTCCCGAAATTCACGTACAAAACGTCAGGGTCGGGCGGAGAGGGGAAATTTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCGTGGAGGGGGAGGAGATTCGGCAGCTGCCGCAGTGCGGGCATTGCTTCCACGTAAGCTGCGTAGACACGTGGCTGGGGACCCACTCGTCGTGCCCCTCTTGCCGACAGATTCTGGTGGTGGCGAGATGCCAGAAGTGCGGGCAGTTCCCGGCGGTGGTCCACGGCGGCGGTCACAGCGAGGAGGAGCACAAGAGGAGGGAAGATAACGATGCTAACAACACGGGTTTGGGGTTTTTGCCTTGA | 576 | 61.81 | MTRYFTALAANTSSASAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAGAGAGAAAANQASANRGLKKKILQSLPKFTYKTSGSGGEGKFAAECAICLAEFVEGEEIRQLPQCGHCFHVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVHGGGHSEEEHKRREDNDANNTGLGFLP | 191 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 332875 | 333450 | - | Lag0017120.1 | Lac5g0036 | 606678 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0036 | 191 | CDD | RING-H2_EL5-like | 103 | 146 | - | - | |
| Lac5g0036 | 191 | ProSiteProfiles | Zinc finger RING-type profile. | 104 | 146 | IPR001841 | - | |
| Lac5g0036 | 191 | SMART | FANCL_C_2 | 100 | 154 | - | - | |
| Lac5g0036 | 191 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 150 | IPR013083 | - | |
| Lac5g0036 | 191 | Pfam | Ring finger domain | 103 | 146 | IPR001841 | - | |
| Lac5g0036 | 191 | SUPERFAMILY | RING/U-box | 103 | 152 | - | - | |
| Lac5g0036 | 191 | SMART | ring_2 | 104 | 145 | IPR001841 | - | |
| Lac5g0036 | 191 | MobiDBLite | consensus disorder prediction | 167 | 182 | - | - | |
| Lac5g0036 | 191 | FunFam | E3 ubiquitin-protein ligase ATL6 | 64 | 152 | - | - | |
| Lac5g0036 | 191 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 16 | 169 | IPR052788 | - | |
| Lac5g0036 | 191 | MobiDBLite | consensus disorder prediction | 165 | 191 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g3640 | Lac-Chr1:55515952 | Lac5g0036 | Lac-Chr5:332875 | 8.30E-19 | dispersed | |
| Lac5g0036 | Lac-Chr5:332875 | Lac9g0266 | Lac-Chr9:4306858 | 2.10E-20 | dispersed | |
| Lac2g0063 | Lac-Chr2:460278 | Lac5g0036 | Lac-Chr5:332875 | 2.00E-47 | wgd |
Pathway information