Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0057 ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACCGGAACCACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTCCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGTCACAAAATTACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTGGAACGTATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTAGGTCAGCATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCTCCCGCCTATGCTGAATCAGAGGTGGAGACGGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACAACAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCGAGAAGTTTTAACCAGATGTCCTTTTATGAGGCAGGGAATGAGCAGCTGAGAGGAAAGATTGAAACGCCAGAAAATTATGGTCTTTACCAGCAGGCAGAAGGCTACAGCATGACCGAACGACCCTGA 840 47.74 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNNNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLRGKIETPENYGLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 496642 498775 + Lag0017141.1 Lac5g0057 606699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0057 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 MobiDBLite consensus disorder prediction 1 26 - -
Lac5g0057 279 MobiDBLite consensus disorder prediction 158 189 - -
Lac5g0057 279 MobiDBLite consensus disorder prediction 260 279 - -
Lac5g0057 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 MobiDBLite consensus disorder prediction 175 189 - -
Lac5g0057 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Lac5g0057 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 276 IPR044559 GO:0003700(InterPro)
Lac5g0057 279 Gene3D - 102 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0057 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0075 Lac-Chr2:546263 Lac5g0057 Lac-Chr5:496642 4.10E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g0287 . 40 238 Wox Gene Family AT3G18010 57.5 1.6e-50 197.6
Lac6g0285 . 10 167 Wox Gene Family AT1G46480 65.1 7.6e-50 194.5
Lac10g2499 . 4 240 Wox Gene Family AT3G03660 50.8 8.8e-45 178.3
Lac5g0057 . 1 276 Wox Gene Family AT4G35550 50.2 5.8e-64 241.9
Lac2g0075 . 1 188 Wox Gene Family AT4G35550 61.5 1.5e-56 217.2
Lac5g0057 . 34 160 Wox Gene Family AT1G20700 58.5 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23802 PF00046 Homeodomain 8.90E-19 CL0123 Lac TF