Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0057 ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACCGGAACCACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTCCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGTCACAAAATTACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTGGAACGTATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTAGGTCAGCATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCTCCCGCCTATGCTGAATCAGAGGTGGAGACGGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACAACAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCGAGAAGTTTTAACCAGATGTCCTTTTATGAGGCAGGGAATGAGCAGCTGAGAGGAAAGATTGAAACGCCAGAAAATTATGGTCTTTACCAGCAGGCAGAAGGCTACAGCATGACCGAACGACCCTGA 840 47.74 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNNNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLRGKIETPENYGLYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 496642 498775 + Lag0017141.1 Lac5g0057 606699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0057 279 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 MobiDBLite consensus disorder prediction 1 26 - -
Lac5g0057 279 MobiDBLite consensus disorder prediction 158 189 - -
Lac5g0057 279 MobiDBLite consensus disorder prediction 260 279 - -
Lac5g0057 279 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 MobiDBLite consensus disorder prediction 175 189 - -
Lac5g0057 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Lac5g0057 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Lac5g0057 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 276 IPR044559 GO:0003700(InterPro)
Lac5g0057 279 Gene3D - 102 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0075 Lac-Chr2:546263 Lac5g0057 Lac-Chr5:496642 4.10E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23802 PF00046 Homeodomain 8.90E-19 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0057 - - - 0.0