Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0057 | ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACCGGAACCACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTCCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACTCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGTCACAAAATTACTTCTAGACAGCGATGGACTCCGACACCTGTGCAACTTCAGATCTTGGAACGTATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAAAAGATCAAAGAGATAACCTCTGAGCTAGGTCAGCATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCAAAGAGGAAGCAGCAAAGTACAGCTCCCGCCTATGCTGAATCAGAGGTGGAGACGGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACAACAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCGAGAAGTTTTAACCAGATGTCCTTTTATGAGGCAGGGAATGAGCAGCTGAGAGGAAAGATTGAAACGCCAGAAAATTATGGTCTTTACCAGCAGGCAGAAGGCTACAGCATGACCGAACGACCCTGA | 840 | 47.74 | MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNNNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLRGKIETPENYGLYQQAEGYSMTERP | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 496642 | 498775 | + | Lag0017141.1 | Lac5g0057 | 606699 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0057 | 279 | SMART | HOX_1 | 98 | 165 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0057 | 279 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Lac5g0057 | 279 | MobiDBLite | consensus disorder prediction | 158 | 189 | - | - | |
Lac5g0057 | 279 | MobiDBLite | consensus disorder prediction | 260 | 279 | - | - | |
Lac5g0057 | 279 | CDD | homeodomain | 100 | 162 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0057 | 279 | MobiDBLite | consensus disorder prediction | 175 | 189 | - | - | |
Lac5g0057 | 279 | Pfam | Homeodomain | 100 | 160 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0057 | 279 | SUPERFAMILY | Homeodomain-like | 96 | 163 | IPR009057 | - | |
Lac5g0057 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 96 | 161 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0057 | 279 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 28 | 276 | IPR044559 | GO:0003700(InterPro) | |
Lac5g0057 | 279 | Gene3D | - | 102 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0075 | Lac-Chr2:546263 | Lac5g0057 | Lac-Chr5:496642 | 4.10E-65 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23802 | PF00046 | Homeodomain | 8.90E-19 | CL0123 | Lac | TF |
Pathway information
