Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0072 ATGCCGATTGAGGATGACGTTGAGAGCTGCGGTAGCAGACCCACCGACTCCTCCTCCTCTTCCTCCCATGCCAACCCCAGGCACCACCGCCAGAAGCTCGAGGTTTACACCCAAGTGCTTCGACGGATTCAGGAATCTAATTTCCATGAGGCCAATCTTCCTGGCTTTGATGATCAGCTTTGGCTCCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTAACACATAAGAGATTACTTCAATTAGCTGTAGACCCTGCTAACCGACCTGCATTTGAAGTTCGTTCTGTTCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATTATTCTAACAAACAGGGGAACCATCCACCTCCAACTTTTGGTTCTTCACCTAGTCTTGAAGCTGTTGCACTTCAGGCCAGCAAGTATGGTGTTGAAGATAGGGACAGTGCCCTAAATGTGACACCTTGCTTTTCTCGGCCAATGCATGAGATCACGTTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTTATCGATGGATGGCCTTATGAGGAAACTGAGGAGCTGAAGAGGGCATTAGAAAAAGAAATTATAAATTTTAAGGAGCAGTATTGGTCAGAAAAGCAGTCCAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGGGAATAAAGTTGGATCCGGGTCATATGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAAGCCTGAGCGTATTAATGGAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTTTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTTCGTCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAATTATCTGCACCAAAAAAATATAATCCACCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTTAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAGCTCAATCTGGAGTGATGACAGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGATCATAAGGCAGATGTTTTTAGTTTTGGAATAGCCTTGTGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCATTACAAGCAGCGGTTGGCGTGGTCCAGAAGGGACTGCGGCCTACAATGCCCAAGAATGCCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCAGGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTAGAGATCCTCAAGCAGATGGCTGAGCAGGTCGAAAATAACGGGGAGAATCGACGCAAGAAGGATAAATTATCCGGTGTGTTCTTCTCAGCCTTCAAGAGGGGGCACCACTGA 1746 43.64 MPIEDDVESCGSRPTDSSSSSSHANPRHHRQKLEVYTQVLRRIQESNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPANRPAFEVRSVQVYPSANENFINSSCLDSSMMEDAQSSFNYSNKQGNHPPPTFGSSPSLEAVALQASKYGVEDRDSALNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRALEKEIINFKEQYWSEKQSSPALGKHNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFGNKVGSGSYGDLYRGTYCSQEVAIKVLKPERINGEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSIYDFLHKQRGVFNLSSLLKVAIDISRGMNYLHQKNIIHRDLKTANLLMDENMVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKGLRPTMPKNAHPVLAELLERCWRQDPTERPNFSEILEILKQMAEQVENNGENRRKKDKLSGVFFSAFKRGHH 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 625725 632078 - Lag0017156.1 Lac5g0072 606714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0072 581 PRINTS Tyrosine kinase catalytic domain signature 456 466 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 PRINTS Tyrosine kinase catalytic domain signature 410 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 PRINTS Tyrosine kinase catalytic domain signature 373 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 CDD STKc_MAP3K-like 305 548 - -
Lac5g0072 581 ProSitePatterns Protein kinases ATP-binding region signature. 305 326 IPR017441 GO:0005524(InterPro)
Lac5g0072 581 ProSiteProfiles ACT domain profile. 186 261 IPR002912 -
Lac5g0072 581 Coils Coil 236 256 - -
Lac5g0072 581 MobiDBLite consensus disorder prediction 1 31 - -
Lac5g0072 581 PANTHER SERINE-THREONINE PROTEIN KINASE 49 552 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac5g0072 581 Gene3D Transferase(Phosphotransferase) domain 1 378 573 - -
Lac5g0072 581 FunFam Serine/threonine-protein kinase isoform 1 289 377 - -
Lac5g0072 581 Pfam Protein tyrosine and serine/threonine kinase 299 548 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 Coils Coil 545 565 - -
Lac5g0072 581 SUPERFAMILY ACT-like 184 248 IPR045865 -
Lac5g0072 581 Gene3D Phosphorylase Kinase; domain 1 289 377 - -
Lac5g0072 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 SMART serkin_6 299 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 SUPERFAMILY Protein kinase-like (PK-like) 273 548 IPR011009 -
Lac5g0072 581 CDD ACT_TyrKc 184 250 - -
Lac5g0072 581 ProSiteProfiles Protein kinase domain profile. 299 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0072 581 FunFam serine/threonine-protein kinase HT1 378 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3332 Lac-Chr1:53046788 Lac5g0072 Lac-Chr5:625725 7.10E-68 dispersed
Lac4g1223 Lac-Chr4:29872632 Lac5g0072 Lac-Chr5:625725 1.30E-230 dispersed
Lac5g0072 Lac-Chr5:625725 Lac8g2560 Lac-Chr8:43304097 5.70E-56 dispersed
Lac8g1700 Lac-Chr8:35179569 Lac5g0072 Lac-Chr5:625725 1.20E-143 transposed
Lac9g2366 Lac-Chr9:42860946 Lac5g0072 Lac-Chr5:625725 2.60E-41 transposed
Lac2g0115 Lac-Chr2:887787 Lac5g0072 Lac-Chr5:625725 1.30E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86182 PF07714 PK_Tyr_Ser-Thr 2.20E-75 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0072 - - - 0.0