Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0072 | ATGCCGATTGAGGATGACGTTGAGAGCTGCGGTAGCAGACCCACCGACTCCTCCTCCTCTTCCTCCCATGCCAACCCCAGGCACCACCGCCAGAAGCTCGAGGTTTACACCCAAGTGCTTCGACGGATTCAGGAATCTAATTTCCATGAGGCCAATCTTCCTGGCTTTGATGATCAGCTTTGGCTCCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTAACACATAAGAGATTACTTCAATTAGCTGTAGACCCTGCTAACCGACCTGCATTTGAAGTTCGTTCTGTTCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATTATTCTAACAAACAGGGGAACCATCCACCTCCAACTTTTGGTTCTTCACCTAGTCTTGAAGCTGTTGCACTTCAGGCCAGCAAGTATGGTGTTGAAGATAGGGACAGTGCCCTAAATGTGACACCTTGCTTTTCTCGGCCAATGCATGAGATCACGTTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTTATCGATGGATGGCCTTATGAGGAAACTGAGGAGCTGAAGAGGGCATTAGAAAAAGAAATTATAAATTTTAAGGAGCAGTATTGGTCAGAAAAGCAGTCCAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGGGAATAAAGTTGGATCCGGGTCATATGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAAGCCTGAGCGTATTAATGGAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTTTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTTCGTCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAATTATCTGCACCAAAAAAATATAATCCACCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTTAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAGCTCAATCTGGAGTGATGACAGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGATCATAAGGCAGATGTTTTTAGTTTTGGAATAGCCTTGTGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCATTACAAGCAGCGGTTGGCGTGGTCCAGAAGGGACTGCGGCCTACAATGCCCAAGAATGCCCATCCCGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCAGGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTAGAGATCCTCAAGCAGATGGCTGAGCAGGTCGAAAATAACGGGGAGAATCGACGCAAGAAGGATAAATTATCCGGTGTGTTCTTCTCAGCCTTCAAGAGGGGGCACCACTGA | 1746 | 43.64 | MPIEDDVESCGSRPTDSSSSSSHANPRHHRQKLEVYTQVLRRIQESNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPANRPAFEVRSVQVYPSANENFINSSCLDSSMMEDAQSSFNYSNKQGNHPPPTFGSSPSLEAVALQASKYGVEDRDSALNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRALEKEIINFKEQYWSEKQSSPALGKHNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFGNKVGSGSYGDLYRGTYCSQEVAIKVLKPERINGEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSIYDFLHKQRGVFNLSSLLKVAIDISRGMNYLHQKNIIHRDLKTANLLMDENMVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKGLRPTMPKNAHPVLAELLERCWRQDPTERPNFSEILEILKQMAEQVENNGENRRKKDKLSGVFFSAFKRGHH | 581 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 625725 | 632078 | - | Lag0017156.1 | Lac5g0072 | 606714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0072 | 581 | PRINTS | Tyrosine kinase catalytic domain signature | 456 | 466 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | PRINTS | Tyrosine kinase catalytic domain signature | 475 | 497 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | PRINTS | Tyrosine kinase catalytic domain signature | 519 | 541 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | PRINTS | Tyrosine kinase catalytic domain signature | 410 | 428 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | PRINTS | Tyrosine kinase catalytic domain signature | 373 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | CDD | STKc_MAP3K-like | 305 | 548 | - | - | |
Lac5g0072 | 581 | ProSitePatterns | Protein kinases ATP-binding region signature. | 305 | 326 | IPR017441 | GO:0005524(InterPro) | |
Lac5g0072 | 581 | ProSiteProfiles | ACT domain profile. | 186 | 261 | IPR002912 | - | |
Lac5g0072 | 581 | Coils | Coil | 236 | 256 | - | - | |
Lac5g0072 | 581 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lac5g0072 | 581 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 49 | 552 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac5g0072 | 581 | Gene3D | Transferase(Phosphotransferase) domain 1 | 378 | 573 | - | - | |
Lac5g0072 | 581 | FunFam | Serine/threonine-protein kinase isoform 1 | 289 | 377 | - | - | |
Lac5g0072 | 581 | Pfam | Protein tyrosine and serine/threonine kinase | 299 | 548 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | Coils | Coil | 545 | 565 | - | - | |
Lac5g0072 | 581 | SUPERFAMILY | ACT-like | 184 | 248 | IPR045865 | - | |
Lac5g0072 | 581 | Gene3D | Phosphorylase Kinase; domain 1 | 289 | 377 | - | - | |
Lac5g0072 | 581 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 416 | 428 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | SMART | serkin_6 | 299 | 552 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | SUPERFAMILY | Protein kinase-like (PK-like) | 273 | 548 | IPR011009 | - | |
Lac5g0072 | 581 | CDD | ACT_TyrKc | 184 | 250 | - | - | |
Lac5g0072 | 581 | ProSiteProfiles | Protein kinase domain profile. | 299 | 551 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g0072 | 581 | FunFam | serine/threonine-protein kinase HT1 | 378 | 569 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g3332 | Lac-Chr1:53046788 | Lac5g0072 | Lac-Chr5:625725 | 7.10E-68 | dispersed | |
Lac4g1223 | Lac-Chr4:29872632 | Lac5g0072 | Lac-Chr5:625725 | 1.30E-230 | dispersed | |
Lac5g0072 | Lac-Chr5:625725 | Lac8g2560 | Lac-Chr8:43304097 | 5.70E-56 | dispersed | |
Lac8g1700 | Lac-Chr8:35179569 | Lac5g0072 | Lac-Chr5:625725 | 1.20E-143 | transposed | |
Lac9g2366 | Lac-Chr9:42860946 | Lac5g0072 | Lac-Chr5:625725 | 2.60E-41 | transposed | |
Lac2g0115 | Lac-Chr2:887787 | Lac5g0072 | Lac-Chr5:625725 | 1.30E-188 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86182 | PF07714 | PK_Tyr_Ser-Thr | 2.20E-75 | CL0016 | Lac | PK |
Pathway information
