Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0080 ATGGATTTCATAGCTAACCCATTTCGGTTTTCTTCTTCCTCGTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACGTCTTGTCCGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGTGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGAGCAATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAGTCAGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGATTAGTTCGAGAACGGATCGGTCCAGCAATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACAAGCTTTGATGACATCCCGAACATCTTCGACACTGGCAGCGCGAAAGGATTGCCTGGGGACTCGGTTGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAACAGTGTAGATGCTTATGGAGAGAAAGTCTGTTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 45.34 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNVLSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDIPNIFDTGSAKGLPGDSVEKIPKIVVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 675686 677026 + Lag0017164.1 Lac5g0080 606722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0080 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Lac5g0080 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lac5g0080 235 SUPERFAMILY RING/U-box 177 235 - -
Lac5g0080 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Lac5g0080 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Lac5g0080 235 CDD RING-H2_NIPL1-like 189 232 - -
Lac5g0080 235 SMART ring_2 190 231 IPR001841 -
Lac5g0080 235 Pfam Ring finger domain 190 232 IPR001841 -
Lac5g0080 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0080 Lac-Chr5:675686 Lac8g2502 Lac-Chr8:42894949 3.70E-14 dispersed
Lac5g0080 Lac-Chr5:675686 Lac7g0421 Lac-Chr7:3278380 1.70E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0080 - - - 0.0