Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0081 | ATGTTATCAAGATTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATTGTCGGTCACATCGGGGCGGCGGTTCCGATTCAGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGTCACCACATCAGTGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTAAGCTTGCTTGAGTCTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCCGAGACGTCGCGATTCATATGTGGTAACTTGTTCCAGAACCTCAAAGTGTTTGCCACAGAAGAAAAGGCCATGTCAGTAAATGTGATCAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTCGGTGTGATTTGTAATGGGAAACTCTACATTGCCAACCTTGGTGATTCCCGAGCAGTGTTGGGAAGGCTTGTTCGTTCCACTGGGGAAGTTCTTCCCATTCAGCTGTCATCAGAGCACAATGTAAGCATACAATCAGTTCGCCAGGAGATGCAGTCTTTGCACCCTGATGACCCCCAGATAGTAGTGTTGAAGCATAATGTATGGCGTGTGAAGGGCTTGATTCAGATTTCTCGGTCAATTGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGCAGGCCTATTTTAAGCTCGGAACCTGCAATCACTGTGCACGAACTCGATCCTAACGATCAATTCCTCATATTTGCTTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGACATAGTTCGCAAGCATCCTCGCAGTGGAAGTGCAAGGAGGCTGGTGAAAGCGGCAATGCAGGAAGCAGCTAAGAAGCGAGAAATGCGATACTCAGACTTGAAGAAGATCGACCGTGGGGTTCGGCGTCATTTTCACGATGACACGACGGTGATAGTCGTGTTTCTGGGTTCGAGCAAAGGGAGCGGTGGTTCAGGGGGAAGGAGCCCTGTGTTGTCAGTGAGAGGGGGAGGAATGAATCTACCTGCAAAGTCTCTAGCACCTTCAGAGCTAAACAATGCCCCCCAATGA | 1194 | 49.66 | MLSRLMNFLRACWQPCADCRSHRGGGSDSVGCQDGLLWYKDHGHHISGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICGNLFQNLKVFATEEKAMSVNVIKKAFQATEEGFLSLVTKQWPMNPQIAAVGSCCLVGVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDPQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAITVHELDPNDQFLIFASDGLWEHLSNQDAVDIVRKHPRSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSKGSGGSGGRSPVLSVRGGGMNLPAKSLAPSELNNAPQ | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 679443 | 682120 | - | Lag0017165.1 | Lac5g0081 | 606723 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0081 | 397 | MobiDBLite | consensus disorder prediction | 361 | 397 | - | - | |
| Lac5g0081 | 397 | SUPERFAMILY | PP2C-like | 60 | 358 | IPR036457 | - | |
| Lac5g0081 | 397 | CDD | PP2Cc | 81 | 357 | IPR001932 | - | |
| Lac5g0081 | 397 | ProSitePatterns | PPM-type phosphatase domain signature. | 83 | 91 | IPR000222 | GO:0043169(InterPro) | |
| Lac5g0081 | 397 | ProSiteProfiles | PPM-type phosphatase domain profile. | 46 | 357 | IPR001932 | - | |
| Lac5g0081 | 397 | PANTHER | PROTEIN PHOSPHATASE | 42 | 356 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac5g0081 | 397 | Pfam | Protein phosphatase 2C | 82 | 326 | IPR001932 | - | |
| Lac5g0081 | 397 | FunFam | Phosphatase 2C family protein | 38 | 366 | - | - | |
| Lac5g0081 | 397 | SMART | PP2C_4 | 42 | 355 | IPR001932 | - | |
| Lac5g0081 | 397 | Gene3D | - | 39 | 362 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0967 | Lac-Chr11:10660091 | Lac5g0081 | Lac-Chr5:679443 | 3.20E-116 | dispersed | |
| Lac12g0185 | Lac-Chr12:2079906 | Lac5g0081 | Lac-Chr5:679443 | 7.60E-110 | dispersed | |
| Lac4g1279 | Lac-Chr4:30786009 | Lac5g0081 | Lac-Chr5:679443 | 7.80E-147 | dispersed | |
| Lac5g0081 | Lac-Chr5:679443 | Lac8g3063 | Lac-Chr8:47318245 | 8.70E-24 | dispersed | |
| Lac1g3042 | Lac-Chr1:51058272 | Lac5g0081 | Lac-Chr5:679443 | 3.60E-171 | wgd | |
| Lac5g0081 | Lac-Chr5:679443 | Lac9g1843 | Lac-Chr9:38204733 | 6.80E-170 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g0081 | K01102 | - | csv:101220137 | 698.353 |