Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0101 ATGGCAGAAGAGGATACTCCCTCTGAAAGTTCTGAATCTTCTTCTTCTTCTTCTTCTTCAGCTCTAACCTCTCCAATGTCCACTCCCTTGAGGAAAGTGTTTTGTAGAATTTCAGGGCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGCTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCACTAGACAGCTTAGCCTATGGTCTTCGCCATGAACTGCTGCAGCGGCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCAAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACATTTTACATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGCTTTCTTCAGGTGAAGGGTGGTCGGAGCCCCCCATTCATGGCAATGTTTCTGCAAAATGGTACAGGGAACCGCTTGATCCTATTAGCGGCGAGAAGATCGGGAAAGCGAGGCAAATTCCACCAGAGGACTTGATCAATATTGCTGGCATCTCCCAAGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCTGATGCTTCTAATGAAAGCATAGTTGCGGTAGTAGGCGTGACAACCGCACTTTATAGCGTAGGCCAACTGATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAAGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAACGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTCTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATTGACTCGTTTTTTCTCAATCTAAAGAAGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTAACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTGATTGGTCTTCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATGTGTTCTCTGTACAATGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCCGGTCGAGTTGTTCAAATATTCACAAATTTGATCAGTAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATTCTCTCAACGATATGGGCAAGTGTTGTATCGATCAGAAGAAATCACGATTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTGCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTCGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGCGACTTTATTTGGTTCTTAGCACACCTGTAGATTCGGCGGATCATCACTGTCAGCTTGATTTCACAAAGCATAATGCGGTGGTATTGCTTGCACTCCGTGGCAGCATGAGTCGATCAATCACATCACAGTGGCTTCGTAGAATCGGACTGCTCACTTTAGAAGCTTCGGAGTGGAATGAACTGACTCTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATATAGTCCACAGGATTCACTAGGTGAGCTGTTACGAGCAGAGTTAATGAGAATTAAAGATATGAAAAGCCAAACATTCATCATTGTTGCCGATATTGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGCAAAAGCTAAGTTTGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGAGGAAAAGGACACATTATAATGAACAATAAGCCGCTGTATAAAGCAAAAATGATTCATATTCTGGAAGCTGTTATGAAGGACAGAAATCTTGAGCTGCAGAAGAAAAATGCTATAAGATCTGCATCAAAGGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGCAATTCCAACTCACAGTGTGCAACATTTCAAGTCAGAGACGGTCAAGAAGAAACGATAGAGAAACCATGTCAGCCACCATTTCCGCCCGTTAGCAATAGCTCAGTTGAGCTAACTCATGTACATTCGAGCGAGAGTAATATGAGGAATGGCGATCCGTGTGACACGAGGCAAGACTCATCAAAGCCTCAATGTCAAAGTTCTGAATCCAATGGACAGAACTTGGGATTCAACTATCCTAAAAGCCAAGGAGAATCACATTCCAAGAACATTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACCATAATGCTTGAAAAGATGGGAGCCACGGTCATTGCTGTCGGAGACGGACTGCTGGCTGTAGAAGCTCTGACTGCCATGCTCAGTGCAGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATACTAATGGATTGCCAAATGCCAAAGATGGACGGTTACGAAGCGACAAAAGCAATTAGAAAGCTAGAGGTGGGAACGAGCCTTCACGTTCCGATTGTCGCATTGACAGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGTTTTGCAAATCAAAACGGAGCCGCTTTCTAACTGAACAACAGGAGAAGATAAGGCCTTCAATGGTCCGAACACGGCGTATATCCATGAGCAGCCAAAAGAAATGGCTTTAA 3750 43.44 MAEEDTPSESSESSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGPKLMMAVDSQDDVIRLGAEWLQKTYGNNSPPGHEVHEENVKLGDQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNSLNDMGKCCIDQKKSRFPNRTKMKQQGDHTKNACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSADHHCQLDFTKHNAVVLLALRGSMSRSITSQWLRRIGLLTLEASEWNELTLILQELFQARSSETKKGYSPQDSLGELLRAELMRIKDMKSQTFIIVADIGILDLSTDIWKDQLYFLDKYSAKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKDRNLELQKKNAIRSASKEGDYHECLEIDSTQFETASSDDSDVSELGNSNSQCATFQVRDGQEETIEKPCQPPFPPVSNSSVELTHVHSSESNMRNGDPCDTRQDSSKPQCQSSESNGQNLGFNYPKSQGESHSKNIHGKKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLLAVEALTAMLSAEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMFCKSKRSRFLTEQQEKIRPSMVRTRRISMSSQKKWL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 817335 822940 - Lag0017185.1 Lac5g0101 606743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0101 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 563 769 IPR036890 -
Lac5g0101 1249 CDD HisKA 509 570 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 698 712 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 733 751 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 716 726 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 FunFam Histidine kinase 1-like protein 496 575 - -
Lac5g0101 1249 ProSiteProfiles Response regulatory domain profile. 1091 1221 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 Pfam Response regulator receiver domain 1092 1210 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 ProSiteProfiles Histidine kinase domain profile. 515 773 IPR005467 -
Lac5g0101 1249 Gene3D - 1069 1222 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1 25 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1021 1076 - -
Lac5g0101 1249 SUPERFAMILY CheY-like 1088 1216 IPR011006 -
Lac5g0101 1249 SMART HisKA_10 508 574 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 Gene3D - 496 575 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 7 25 - -
Lac5g0101 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 496 575 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 Pfam His Kinase A (phospho-acceptor) domain 509 574 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 CDD REC_hyHK_CKI1_RcsC-like 1092 1214 - -
Lac5g0101 1249 SMART HKATPase_4 621 773 IPR003594 -
Lac5g0101 1249 SMART REC_2 1090 1217 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1003 1079 - -
Lac5g0101 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 779 IPR050736 -
Lac5g0101 1249 Gene3D - 576 774 IPR036890 -
Lac5g0101 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 621 770 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0101 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0101 Lac-Chr5:817335 Lac6g2537 Lac-Chr6:43146084 5.40E-72 dispersed
Lac5g0101 Lac-Chr5:817335 Lac9g1967 Lac-Chr9:39417920 2.60E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23804 PF02518 HATPase_c 6.60E-23 CL0025 Lac TR