Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0101 ATGGCAGAAGAGGATACTCCCTCTGAAAGTTCTGAATCTTCTTCTTCTTCTTCTTCTTCAGCTCTAACCTCTCCAATGTCCACTCCCTTGAGGAAAGTGTTTTGTAGAATTTCAGGGCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGCTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCACTAGACAGCTTAGCCTATGGTCTTCGCCATGAACTGCTGCAGCGGCCGATCTTACGGATGTGGGGTGTCTTGAATTCCACTGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCAAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACATTTTACATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGCTTTCTTCAGGTGAAGGGTGGTCGGAGCCCCCCATTCATGGCAATGTTTCTGCAAAATGGTACAGGGAACCGCTTGATCCTATTAGCGGCGAGAAGATCGGGAAAGCGAGGCAAATTCCACCAGAGGACTTGATCAATATTGCTGGCATCTCCCAAGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCTGATGCTTCTAATGAAAGCATAGTTGCGGTAGTAGGCGTGACAACCGCACTTTATAGCGTAGGCCAACTGATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAAGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAACGGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGACGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTCTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATTGACTCGTTTTTTCTCAATCTAAAGAAGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTAACAAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTGATTGGTCTTCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCAACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATGTGTTCTCTGTACAATGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCCGGTCGAGTTGTTCAAATATTCACAAATTTGATCAGTAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCGAATTCTCTCAACGATATGGGCAAGTGTTGTATCGATCAGAAGAAATCACGATTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTGCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACCCGAACGCATGGTGGCACGGGTCTCGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACATTGATGCGACTTTATTTGGTTCTTAGCACACCTGTAGATTCGGCGGATCATCACTGTCAGCTTGATTTCACAAAGCATAATGCGGTGGTATTGCTTGCACTCCGTGGCAGCATGAGTCGATCAATCACATCACAGTGGCTTCGTAGAATCGGACTGCTCACTTTAGAAGCTTCGGAGTGGAATGAACTGACTCTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATATAGTCCACAGGATTCACTAGGTGAGCTGTTACGAGCAGAGTTAATGAGAATTAAAGATATGAAAAGCCAAACATTCATCATTGTTGCCGATATTGGGATACTCGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGCAAAAGCTAAGTTTGCATGGATGTTAAACCACGATACGTCCAACGCCATTAAGATGGAGCTCCGAGGAAAAGGACACATTATAATGAACAATAAGCCGCTGTATAAAGCAAAAATGATTCATATTCTGGAAGCTGTTATGAAGGACAGAAATCTTGAGCTGCAGAAGAAAAATGCTATAAGATCTGCATCAAAGGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGCAATTCCAACTCACAGTGTGCAACATTTCAAGTCAGAGACGGTCAAGAAGAAACGATAGAGAAACCATGTCAGCCACCATTTCCGCCCGTTAGCAATAGCTCAGTTGAGCTAACTCATGTACATTCGAGCGAGAGTAATATGAGGAATGGCGATCCGTGTGACACGAGGCAAGACTCATCAAAGCCTCAATGTCAAAGTTCTGAATCCAATGGACAGAACTTGGGATTCAACTATCCTAAAAGCCAAGGAGAATCACATTCCAAGAACATTCATGGTAAAAAGTCTCTCGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACCATAATGCTTGAAAAGATGGGAGCCACGGTCATTGCTGTCGGAGACGGACTGCTGGCTGTAGAAGCTCTGACTGCCATGCTCAGTGCAGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATACTAATGGATTGCCAAATGCCAAAGATGGACGGTTACGAAGCGACAAAAGCAATTAGAAAGCTAGAGGTGGGAACGAGCCTTCACGTTCCGATTGTCGCATTGACAGCACACGCAATGTCGTCCGATGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATATCTAACAAAGCCAATTGACTATAAGCTGATGTTTTGCAAATCAAAACGGAGCCGCTTTCTAACTGAACAACAGGAGAAGATAAGGCCTTCAATGGTCCGAACACGGCGTATATCCATGAGCAGCCAAAAGAAATGGCTTTAA 3750 43.44 MAEEDTPSESSESSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLSEYVMRKYSKPANQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGPKLMMAVDSQDDVIRLGAEWLQKTYGNNSPPGHEVHEENVKLGDQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNSLNDMGKCCIDQKKSRFPNRTKMKQQGDHTKNACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSADHHCQLDFTKHNAVVLLALRGSMSRSITSQWLRRIGLLTLEASEWNELTLILQELFQARSSETKKGYSPQDSLGELLRAELMRIKDMKSQTFIIVADIGILDLSTDIWKDQLYFLDKYSAKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMIHILEAVMKDRNLELQKKNAIRSASKEGDYHECLEIDSTQFETASSDDSDVSELGNSNSQCATFQVRDGQEETIEKPCQPPFPPVSNSSVELTHVHSSESNMRNGDPCDTRQDSSKPQCQSSESNGQNLGFNYPKSQGESHSKNIHGKKSLEGLRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLLAVEALTAMLSAEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMFCKSKRSRFLTEQQEKIRPSMVRTRRISMSSQKKWL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 817335 822940 - Lag0017185.1 Lac5g0101 606743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0101 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 563 769 IPR036890 -
Lac5g0101 1249 CDD HisKA 509 570 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 698 712 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 733 751 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 PRINTS Bacterial sensor protein C-terminal signature 716 726 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac5g0101 1249 FunFam Histidine kinase 1-like protein 496 575 - -
Lac5g0101 1249 ProSiteProfiles Response regulatory domain profile. 1091 1221 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 Pfam Response regulator receiver domain 1092 1210 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 ProSiteProfiles Histidine kinase domain profile. 515 773 IPR005467 -
Lac5g0101 1249 Gene3D - 1069 1222 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1 25 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1021 1076 - -
Lac5g0101 1249 SUPERFAMILY CheY-like 1088 1216 IPR011006 -
Lac5g0101 1249 SMART HisKA_10 508 574 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 Gene3D - 496 575 - -
Lac5g0101 1249 MobiDBLite consensus disorder prediction 7 25 - -
Lac5g0101 1249 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 496 575 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 Pfam His Kinase A (phospho-acceptor) domain 509 574 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac5g0101 1249 CDD REC_hyHK_CKI1_RcsC-like 1092 1214 - -
Lac5g0101 1249 SMART HKATPase_4 621 773 IPR003594 -
Lac5g0101 1249 SMART REC_2 1090 1217 IPR001789 GO:0000160(InterPro)
Lac5g0101 1249 MobiDBLite consensus disorder prediction 1003 1079 - -
Lac5g0101 1249 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 779 IPR050736 -
Lac5g0101 1249 Gene3D - 576 774 IPR036890 -
Lac5g0101 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 621 770 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0101 Lac-Chr5:817335 Lac6g2537 Lac-Chr6:43146084 5.40E-72 dispersed
Lac5g0101 Lac-Chr5:817335 Lac9g1967 Lac-Chr9:39417920 2.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23804 PF02518 HATPase_c 6.60E-23 CL0025 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0101 - - - 0.0