Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0111 ATGGCTTCCTCCATTTCTACTTCTCTTCTTCTTCTCTTCCTCTTCTTCCCTTTCTTCTCAGGTGTAAATTCAGCAATTTTCACCATTTTAAACCAGTGTGATTACACAGTTTGGCCGGGAGTTTTGTCCGGCGCCGGCACATCGCAGCTCTCCACCACCGGCTTCGTCCTGCAGCCGGGAGAGTCCAACGCCCTCACCATGCCGCCGTCATGGTCCGGCCGCATTTGGGGCCGCACTTATTGCTCCCAAGACGCCGCCGGCAGATTCTTCTGCACCACTGCCGATTGCGGCTCCGGCACCGTCGAATGCAACGGTGCCGGTGCTGCCCCGCCCACCACCCTCGCCGAGTTCACGTTGAATGGTGCCGGTGGGCTTGATTTCTATGATGTCAGCCTCGTCGATGGCTACAATGTGCCTATGTTAATCACGCCGCAAGGTGGAACAGGTGGGGGCAATTGCACGACGATCGGATGTGCGACGGATTTAAATAGCGATTGCCCAGCGGAGCTAAGAGTGGTGGCAAGCGATGCAGATGGGCGGAGCGTGGCATGTAAGAGCGCGTGTGGGGCTTTTGGTGAGCCACAATATTGCTGTAGTGGCGAATACGGGAACCCGACCACCTGCCAACCGTCGTCGTACTCGGCGTTCTTCAAGTCGGCGTGCCCACAGGCTTATAGCTATGCCTATGATGATGGAACCAGCACCTTCACTTGTGCTGCTGCCAATTACCTCATCACTTTTTGTCCTTCTCTTTCGACCAGGTGCGCGATCTTAACGACAACAATGATTTGTAGCATTTTGACTTAG 807 55.02 MASSISTSLLLLFLFFPFFSGVNSAIFTILNQCDYTVWPGVLSGAGTSQLSTTGFVLQPGESNALTMPPSWSGRIWGRTYCSQDAAGRFFCTTADCGSGTVECNGAGAAPPTTLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQGGTGGGNCTTIGCATDLNSDCPAELRVVASDADGRSVACKSACGAFGEPQYCCSGEYGNPTTCQPSSYSAFFKSACPQAYSYAYDDGTSTFTCAAANYLITFCPSLSTRCAILTTTMICSILT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 904995 907312 - Lag0017195.1 Lac5g0111 606753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0111 268 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Lac5g0111 268 PANTHER OS03G0233200 PROTEIN 11 249 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Lac5g0111 268 SUPERFAMILY Osmotin, thaumatin-like protein 25 250 IPR037176 -
Lac5g0111 268 Gene3D Thaumatin 25 249 IPR037176 -
Lac5g0111 268 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Lac5g0111 268 Pfam Thaumatin family 31 249 IPR001938 -
Lac5g0111 268 PIRSF PR5 1 268 IPR001938 -
Lac5g0111 268 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lac5g0111 268 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Lac5g0111 268 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lac5g0111 268 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lac5g0111 268 CDD TLP-PA 26 248 - -
Lac5g0111 268 SMART tha2 27 249 IPR001938 -
Lac5g0111 268 FunFam THAUMATIN-LIKE PROTEIN 1 25 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3009 Lac-Chr1:50793277 Lac5g0111 Lac-Chr5:904995 6.20E-91 dispersed
Lac2g2507 Lac-Chr2:36959078 Lac5g0111 Lac-Chr5:904995 6.00E-66 dispersed
Lac5g0111 Lac-Chr5:904995 Lac6g0507 Lac-Chr6:4256053 1.20E-88 dispersed
Lac5g0110 Lac-Chr5:883127 Lac5g0111 Lac-Chr5:904995 3.10E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0111 - - - 0.0