Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0129 ATGGGCAGGATGGGAGGTCGGCAGAGGACTTACAGCGCCAATTCCACCGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCCAGTGCCACTGTTTTTCGAGCGATCTATACTCCCTCTAATGAAGTTGTCGCCATCAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAAGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAAGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAAGCTCTTAAAGCTTTGGAATACCTTCATCGGCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTACTCGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCTAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCGGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCCGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGACATGCACCATTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAGAAGTTCTCTAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTCGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTTTGTTCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAGCATGGTGTCGGGGCAAGTGGTCAGGGATTGCCACAAGTGGAGTGCTTGAGCAAAAAGGGAAACTTTATGGAAAGTGATATGCTGAAAGCTGGGTTCCAAGAAAAAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACCGGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCCGGTATTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGACAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCAAAAGCTAATCTCGTACAAATTAAGGGGCGTTTTTCAGTGACTTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGGCGGTCTTCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATGCCAAGCAGCCTGTCAGCCAACCCCCCAAGGAGGCCAACATCAATGTGCCTACATCAATTCTTATTCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGTTGATGTAACTCAAAACGGAAAGTTGCCTCCATTGCCTCGAAGCTCAGATAATAATGGAAGTGCTGAAACAGTGGCGGTTGAGAGAGAGCGTTTACTGTCGCGAAAGGTCTCCGAACTTCAAGCTAGAATGACGCATCTGACTTATGAATTGACCGCTGAAAAGCTGAAATACATTCAAACTTCCACTGATCAATTTTTGGCCTACAGTTACAAGAGCAGTTCAACTCAGCCTCCAGTCAGGAAGAAAATGAGATCAAGAGGGAAGAGAACGTCTGACAAGGCACGTCCCGTGCTACGATTACTCTCTGTCGTCGAGGCGAAGCCAGCAACCATTTTTCTCAATCTCCCATCGCCATCTTCCATTTGGTTCTCTTCAGAGTTGGCACAATTCAGGTCAGTTGAGATCCCTGATCCTGAGTGGCAATCAGCTCCCAAAACTCCCATGTTGCTCAGTAAGCCCTCAAATTTTATCTTGTTTATTGTCTGGATGGCCATGAGATGGAAAAAAAAAAGCCCTTGGAAGCTTAGTTTGTGA 2388 44.18 MGRMGGRQRTYSANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKEALKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFCSQSSLRNFNSCNESSQDEHGVGASGQGLPQVECLSKKGNFMESDMLKAGFQEKTGWKRNGTSTEAEASTSGQDIVPGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDAKQPVSQPPKEANINVPTSILIPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDVTQNGKLPPLPRSSDNNGSAETVAVERERLLSRKVSELQARMTHLTYELTAEKLKYIQTSTDQFLAYSYKSSSTQPPVRKKMRSRGKRTSDKARPVLRLLSVVEAKPATIFLNLPSPSSIWFSSELAQFRSVEIPDPEWQSAPKTPMLLSKPSNFILFIVWMAMRWKKKSPWKLSL 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1050954 1066990 + Lag0017213.1 Lac5g0129 606771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0129 795 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 9 251 IPR047173 GO:0043539(InterPro)
Lac5g0129 795 Coils Coil 313 333 - -
Lac5g0129 795 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Lac5g0129 795 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Lac5g0129 795 Gene3D Transferase(Phosphotransferase) domain 1 99 344 - -
Lac5g0129 795 MobiDBLite consensus disorder prediction 402 436 - -
Lac5g0129 795 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Lac5g0129 795 MobiDBLite consensus disorder prediction 453 477 - -
Lac5g0129 795 MobiDBLite consensus disorder prediction 402 491 - -
Lac5g0129 795 SMART serkin_6 18 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0129 795 SUPERFAMILY Protein kinase-like (PK-like) 17 242 IPR011009 -
Lac5g0129 795 ProSiteProfiles Protein kinase domain profile. 18 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0129 795 Pfam Protein kinase domain 18 232 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0129 Lac-Chr5:1050954 Lac8g2588 Lac-Chr8:43528216 9.90E-128 dispersed
Lac5g0129 Lac-Chr5:1050954 Lac5g2947 Lac-Chr5:47502179 1.60E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86183 PF00069 Pkinase 1.70E-51 CL0016 Lac PK