Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0150 | ATGGCAGCGTCAATGGCGCCGGGTAAGCTGACGGAAGGAGGAGTGATGGTTATATGCAAGAGGGAATCGACGGCAGAGGCGTTTCAGCCGGTTGTACAAGTAATTGATTTGAAATTGGTTAACACTGCGCAGCAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGAATGTTGGGCACTCAGCTGAATGAATTGGTTAAGTCTGGGAAGTTGCAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGAGGTGATAGAAGAAATCTGTGAATTTATTGGCCAGCCTGTACCAGCAACAAGATCAATAACAGGTGCATTTAGTGGAAGCCCCCAATCCTCTGTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGTGAATGTATCTAGTGCATCTTTTGAACAGCCTAAAGTGAATCAACCACATGTACCGCATGTAGGATCTTATTCTAACACTCCTGAGTCTGGGAGATACAACGCATCAACTGTGCCTCCTCTTTACTCTAAGACAGATCCTGGAACAAGATTTAACGGGTCGTCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTTCAAGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAGAGGGCCAGTAGCAAAAAACGAAGCTCCCCCGAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAACAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATGCAGTAGCTGATCAATTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAGTCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTAGTAGATGTAATTGGTGTCGTTTCCTCCATTAATCCTGCAACTTCTATAATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCGGAAGGACAAAGATTGCAAAATATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGGACCATTTCAACGAGTCAGCTTTTTATAGATCCAGATTTCCCCGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGAAGGACAGAGGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCGGATTGGATTACTGTTAGTGCAACCATTTCCTTTATTAAGGTGGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCAGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATCATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACGGTGGTGAAAGCAGAAAGCATTAATTTTTCGACCGAGTCCCGATTTCTTCTAGATTTGATGGAAAAGCTCCGGGCGGAGAACCCTGGTTCTATTACCCCGAAGGCAGAAAGTACCATACATAATCCCGGACTTCACGACCTTGGAGCTGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGCCAGAGAATATAGTACACCAAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGTTCTAGGCCTTCTCAATCCATGCCGCTTAACTCGCATACGTACTGCAACAGCTGTGGGGGTTCTGGTCACAGCTCAACGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCACGTTGGAGGAGGGATGTATTCAAATAGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGACTGCCCCGGTTTGGCCACGGTCCCTCCAGCTTATGGTAACGGTGGCTTCACGGCTAGATGA | 2571 | 45.0 | MAASMAPGKLTEGGVMVICKRESTAEAFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELEVIEEICEFIGQPVPATRSITGAFSGSPQSSVGASPGSGMVGKVNVSSASFEQPKVNQPHVPHVGSYSNTPESGRYNASTVPPLYSKTDPGTRFNGSSPLSGSYGDQKMAYHNNGSDISRPPLNAYGRPQPTYQQPPPMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNAVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVSSINPATSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFIDPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTEVRKTISQIKDERLGTSEKPDWITVSATISFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENPGSITPKAESTIHNPGLHDLGAGNVGGGQFVSPIRNSSNVAREYSTPNQGVQYGNQYSSSRPSQSMPLNSHTYCNSCGGSGHSSTNCPSIMSGPALHVGGGMYSNRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNGGFTAR | 856 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1231616 | 1235652 | + | Lag0017234.1 | Lac5g0150 | 606792 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0150 | 856 | FunFam | Replication protein A subunit | 512 | 703 | - | - | |
Lac5g0150 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 260 | 373 | IPR012340 | - | |
Lac5g0150 | 856 | NCBIfam | replication factor-a protein 1 (rpa1) | 237 | 702 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
Lac5g0150 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 526 | 703 | IPR012340 | - | |
Lac5g0150 | 856 | FunFam | Replication protein A subunit | 373 | 511 | - | - | |
Lac5g0150 | 856 | CDD | RPA1_DBD_B | 395 | 502 | - | - | |
Lac5g0150 | 856 | Gene3D | - | 260 | 369 | IPR012340 | - | |
Lac5g0150 | 856 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 263 | 683 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
Lac5g0150 | 856 | Pfam | OB-fold nucleic acid binding domain | 274 | 358 | IPR004365 | GO:0003676(InterPro) | |
Lac5g0150 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 9 | 117 | IPR012340 | - | |
Lac5g0150 | 856 | MobiDBLite | consensus disorder prediction | 168 | 210 | - | - | |
Lac5g0150 | 856 | FunFam | Replication protein A subunit | 260 | 370 | - | - | |
Lac5g0150 | 856 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - | |
Lac5g0150 | 856 | ProSiteProfiles | Zinc finger CCHC-type profile. | 781 | 796 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac5g0150 | 856 | Gene3D | - | 8 | 123 | IPR012340 | - | |
Lac5g0150 | 856 | CDD | RPA1_DBD_A | 263 | 366 | - | - | |
Lac5g0150 | 856 | FunFam | Replication protein A subunit | 9 | 123 | - | - | |
Lac5g0150 | 856 | CDD | RPA1N | 13 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Lac5g0150 | 856 | CDD | RPA1_DBD_C | 529 | 702 | IPR047192 | - | |
Lac5g0150 | 856 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
Lac5g0150 | 856 | Gene3D | - | 511 | 703 | IPR012340 | - | |
Lac5g0150 | 856 | Gene3D | - | 777 | 843 | - | - | |
Lac5g0150 | 856 | ProSiteProfiles | Zinc finger CCHC-type profile. | 825 | 839 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac5g0150 | 856 | Gene3D | - | 373 | 510 | IPR012340 | - | |
Lac5g0150 | 856 | SUPERFAMILY | Retrovirus zinc finger-like domains | 805 | 843 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac5g0150 | 856 | Pfam | Zinc knuckle | 824 | 839 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac5g0150 | 856 | Pfam | Replication factor-A C terminal domain | 545 | 696 | IPR013955 | - | |
Lac5g0150 | 856 | Pfam | Replication protein A OB domain | 384 | 488 | IPR031657 | - | |
Lac5g0150 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 379 | 507 | IPR012340 | - | |
Lac5g0150 | 856 | SMART | c2hcfinal6 | 824 | 840 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Lac5g0150 | 856 | SMART | c2hcfinal6 | 780 | 796 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g0150 | Lac-Chr5:1231616 | Lac6g3094 | Lac-Chr6:48424725 | 2.90E-202 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g0150 | K07466 | - | csv:101211358 | 1536.55 |