Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0150 ATGGCAGCGTCAATGGCGCCGGGTAAGCTGACGGAAGGAGGAGTGATGGTTATATGCAAGAGGGAATCGACGGCAGAGGCGTTTCAGCCGGTTGTACAAGTAATTGATTTGAAATTGGTTAACACTGCGCAGCAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGAATGTTGGGCACTCAGCTGAATGAATTGGTTAAGTCTGGGAAGTTGCAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGAGGTGATAGAAGAAATCTGTGAATTTATTGGCCAGCCTGTACCAGCAACAAGATCAATAACAGGTGCATTTAGTGGAAGCCCCCAATCCTCTGTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGTGAATGTATCTAGTGCATCTTTTGAACAGCCTAAAGTGAATCAACCACATGTACCGCATGTAGGATCTTATTCTAACACTCCTGAGTCTGGGAGATACAACGCATCAACTGTGCCTCCTCTTTACTCTAAGACAGATCCTGGAACAAGATTTAACGGGTCGTCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTTCAAGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAGAGGGCCAGTAGCAAAAAACGAAGCTCCCCCGAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAACAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATGCAGTAGCTGATCAATTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAGTCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTAGTAGATGTAATTGGTGTCGTTTCCTCCATTAATCCTGCAACTTCTATAATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCGGAAGGACAAAGATTGCAAAATATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGGACCATTTCAACGAGTCAGCTTTTTATAGATCCAGATTTCCCCGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGAAGGACAGAGGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCGGATTGGATTACTGTTAGTGCAACCATTTCCTTTATTAAGGTGGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCAGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATCATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACGGTGGTGAAAGCAGAAAGCATTAATTTTTCGACCGAGTCCCGATTTCTTCTAGATTTGATGGAAAAGCTCCGGGCGGAGAACCCTGGTTCTATTACCCCGAAGGCAGAAAGTACCATACATAATCCCGGACTTCACGACCTTGGAGCTGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGCCAGAGAATATAGTACACCAAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGTTCTAGGCCTTCTCAATCCATGCCGCTTAACTCGCATACGTACTGCAACAGCTGTGGGGGTTCTGGTCACAGCTCAACGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCACGTTGGAGGAGGGATGTATTCAAATAGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGACTGCCCCGGTTTGGCCACGGTCCCTCCAGCTTATGGTAACGGTGGCTTCACGGCTAGATGA 2571 45.0 MAASMAPGKLTEGGVMVICKRESTAEAFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELEVIEEICEFIGQPVPATRSITGAFSGSPQSSVGASPGSGMVGKVNVSSASFEQPKVNQPHVPHVGSYSNTPESGRYNASTVPPLYSKTDPGTRFNGSSPLSGSYGDQKMAYHNNGSDISRPPLNAYGRPQPTYQQPPPMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNAVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVSSINPATSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFIDPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTEVRKTISQIKDERLGTSEKPDWITVSATISFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENPGSITPKAESTIHNPGLHDLGAGNVGGGQFVSPIRNSSNVAREYSTPNQGVQYGNQYSSSRPSQSMPLNSHTYCNSCGGSGHSSTNCPSIMSGPALHVGGGMYSNRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNGGFTAR 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1231616 1235652 + Lag0017234.1 Lac5g0150 606792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0150 856 FunFam Replication protein A subunit 512 703 - -
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 260 373 IPR012340 -
Lac5g0150 856 NCBIfam replication factor-a protein 1 (rpa1) 237 702 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 526 703 IPR012340 -
Lac5g0150 856 FunFam Replication protein A subunit 373 511 - -
Lac5g0150 856 CDD RPA1_DBD_B 395 502 - -
Lac5g0150 856 Gene3D - 260 369 IPR012340 -
Lac5g0150 856 PANTHER REPLICATION FACTOR A 1, RFA1 263 683 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lac5g0150 856 Pfam OB-fold nucleic acid binding domain 274 358 IPR004365 GO:0003676(InterPro)
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Lac5g0150 856 MobiDBLite consensus disorder prediction 168 210 - -
Lac5g0150 856 FunFam Replication protein A subunit 260 370 - -
Lac5g0150 856 MobiDBLite consensus disorder prediction 156 210 - -
Lac5g0150 856 ProSiteProfiles Zinc finger CCHC-type profile. 781 796 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Gene3D - 8 123 IPR012340 -
Lac5g0150 856 CDD RPA1_DBD_A 263 366 - -
Lac5g0150 856 FunFam Replication protein A subunit 9 123 - -
Lac5g0150 856 CDD RPA1N 13 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac5g0150 856 CDD RPA1_DBD_C 529 702 IPR047192 -
Lac5g0150 856 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac5g0150 856 Gene3D - 511 703 IPR012340 -
Lac5g0150 856 Gene3D - 777 843 - -
Lac5g0150 856 ProSiteProfiles Zinc finger CCHC-type profile. 825 839 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Gene3D - 373 510 IPR012340 -
Lac5g0150 856 SUPERFAMILY Retrovirus zinc finger-like domains 805 843 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Pfam Zinc knuckle 824 839 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Pfam Replication factor-A C terminal domain 545 696 IPR013955 -
Lac5g0150 856 Pfam Replication protein A OB domain 384 488 IPR031657 -
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 379 507 IPR012340 -
Lac5g0150 856 SMART c2hcfinal6 824 840 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 SMART c2hcfinal6 780 796 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0150 Lac-Chr5:1231616 Lac6g3094 Lac-Chr6:48424725 2.90E-202 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0150 K07466 - csv:101211358 1536.55