Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0150 ATGGCAGCGTCAATGGCGCCGGGTAAGCTGACGGAAGGAGGAGTGATGGTTATATGCAAGAGGGAATCGACGGCAGAGGCGTTTCAGCCGGTTGTACAAGTAATTGATTTGAAATTGGTTAACACTGCGCAGCAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGAATGTTGGGCACTCAGCTGAATGAATTGGTTAAGTCTGGGAAGTTGCAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGAGGTGATAGAAGAAATCTGTGAATTTATTGGCCAGCCTGTACCAGCAACAAGATCAATAACAGGTGCATTTAGTGGAAGCCCCCAATCCTCTGTGGGGGCTTCACCTGGCAGTGGAATGGTTGGTAAGGTGAATGTATCTAGTGCATCTTTTGAACAGCCTAAAGTGAATCAACCACATGTACCGCATGTAGGATCTTATTCTAACACTCCTGAGTCTGGGAGATACAACGCATCAACTGTGCCTCCTCTTTACTCTAAGACAGATCCTGGAACAAGATTTAACGGGTCGTCTCCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTTCAAGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAACAGAGGGCCAGTAGCAAAAAACGAAGCTCCCCCGAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAACAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATGCAGTAGCTGATCAATTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAGTCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTAGTAGATGTAATTGGTGTCGTTTCCTCCATTAATCCTGCAACTTCTATAATGAGAAAAAATGGTACTGAAACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCGGAAGGACAAAGATTGCAAAATATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGGACCATTTCAACGAGTCAGCTTTTTATAGATCCAGATTTCCCCGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGTGTGGGAAGGACAGAGGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCGGATTGGATTACTGTTAGTGCAACCATTTCCTTTATTAAGGTGGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCAGCAAAAAGATTGTATTATTTGAAATATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATCATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACGGTGGTGAAAGCAGAAAGCATTAATTTTTCGACCGAGTCCCGATTTCTTCTAGATTTGATGGAAAAGCTCCGGGCGGAGAACCCTGGTTCTATTACCCCGAAGGCAGAAAGTACCATACATAATCCCGGACTTCACGACCTTGGAGCTGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGCCAGAGAATATAGTACACCAAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGTTCTAGGCCTTCTCAATCCATGCCGCTTAACTCGCATACGTACTGCAACAGCTGTGGGGGTTCTGGTCACAGCTCAACGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCACGTTGGAGGAGGGATGTATTCAAATAGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTCGGGACTGCCCCGGTTTGGCCACGGTCCCTCCAGCTTATGGTAACGGTGGCTTCACGGCTAGATGA 2571 45.0 MAASMAPGKLTEGGVMVICKRESTAEAFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELEVIEEICEFIGQPVPATRSITGAFSGSPQSSVGASPGSGMVGKVNVSSASFEQPKVNQPHVPHVGSYSNTPESGRYNASTVPPLYSKTDPGTRFNGSSPLSGSYGDQKMAYHNNGSDISRPPLNAYGRPQPTYQQPPPMYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNAVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVSSINPATSIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFIDPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTEVRKTISQIKDERLGTSEKPDWITVSATISFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENPGSITPKAESTIHNPGLHDLGAGNVGGGQFVSPIRNSSNVAREYSTPNQGVQYGNQYSSSRPSQSMPLNSHTYCNSCGGSGHSSTNCPSIMSGPALHVGGGMYSNRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNGGFTAR 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1231616 1235652 + Lag0017234.1 Lac5g0150 606792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0150 856 FunFam Replication protein A subunit 512 703 - -
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 260 373 IPR012340 -
Lac5g0150 856 NCBIfam replication factor-a protein 1 (rpa1) 237 702 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 526 703 IPR012340 -
Lac5g0150 856 FunFam Replication protein A subunit 373 511 - -
Lac5g0150 856 CDD RPA1_DBD_B 395 502 - -
Lac5g0150 856 Gene3D - 260 369 IPR012340 -
Lac5g0150 856 PANTHER REPLICATION FACTOR A 1, RFA1 263 683 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Lac5g0150 856 Pfam OB-fold nucleic acid binding domain 274 358 IPR004365 GO:0003676(InterPro)
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Lac5g0150 856 MobiDBLite consensus disorder prediction 168 210 - -
Lac5g0150 856 FunFam Replication protein A subunit 260 370 - -
Lac5g0150 856 MobiDBLite consensus disorder prediction 156 210 - -
Lac5g0150 856 ProSiteProfiles Zinc finger CCHC-type profile. 781 796 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Gene3D - 8 123 IPR012340 -
Lac5g0150 856 CDD RPA1_DBD_A 263 366 - -
Lac5g0150 856 FunFam Replication protein A subunit 9 123 - -
Lac5g0150 856 CDD RPA1N 13 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac5g0150 856 CDD RPA1_DBD_C 529 702 IPR047192 -
Lac5g0150 856 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Lac5g0150 856 Gene3D - 511 703 IPR012340 -
Lac5g0150 856 Gene3D - 777 843 - -
Lac5g0150 856 ProSiteProfiles Zinc finger CCHC-type profile. 825 839 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Gene3D - 373 510 IPR012340 -
Lac5g0150 856 SUPERFAMILY Retrovirus zinc finger-like domains 805 843 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Pfam Zinc knuckle 824 839 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 Pfam Replication factor-A C terminal domain 545 696 IPR013955 -
Lac5g0150 856 Pfam Replication protein A OB domain 384 488 IPR031657 -
Lac5g0150 856 SUPERFAMILY Nucleic acid-binding proteins 379 507 IPR012340 -
Lac5g0150 856 SMART c2hcfinal6 824 840 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g0150 856 SMART c2hcfinal6 780 796 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0150 K07466 - - csv:101211358 1536.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0150 Lac-Chr5:1231616 Lac6g3094 Lac-Chr6:48424725 2.90E-202 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G14700 66.0 8.5e-260 894.0
Lac12g1517 . 659 1335 Core DNA Replication Machinery Family AT4G12620 67.8 6.1e-266 914.4
Lac6g0338 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.2 7.3e-144 507.7
Lac11g1707 . 15 445 Core DNA Replication Machinery Family AT5G16690 53.0 3.3e-122 436.8
Lac13g1196 . 146 556 Core DNA Replication Machinery Family AT2G01120 63.4 3.2e-149 525.8
Lac13g2285 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 1.5e-94 343.6
Lac12g0052 . 61 854 Core DNA Replication Machinery Family AT1G79150 60.2 5.7e-251 864.8
Lac7g1551 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1345.5
Lac1g3505 . 93 642 Core DNA Replication Machinery Family AT5G46280 82.9 1.3e-262 902.9
Lac4g1433 . 1 845 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1183.3
Lac6g2877 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.1
Lac7g1919 . 9 358 Core DNA Replication Machinery Family AT2G07690 68.4 3.5e-132 469.9
Lac1g3681 . 1 832 Core DNA Replication Machinery Family AT5G44635 72.7 0.0e+00 1191.8
Lac4g2531 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.8 0.0e+00 1221.8
Lac9g2413 . 3 234 Core DNA Replication Machinery Family AT2G29680 65.1 9.3e-79 292.0
Lac12g1686 . 126 352 Core DNA Replication Machinery Family AT2G29680 55.1 1.5e-76 284.6
Lac12g1686 . 100 353 Core DNA Replication Machinery Family AT1G07270 53.1 1.5e-75 281.2
Lac9g2413 . 3 204 Core DNA Replication Machinery Family AT1G07270 65.8 1.6e-69 261.2
Lac4g1977 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.4 1.4e-259 892.9
Lac10g3047 . 12 781 Core DNA Replication Machinery Family AT3G09660 73.4 0.0e+00 1102.8
Lac12g0230 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.9 2.2e-287 985.3
Lac9g1824 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.2 1.9e-119 426.8
Lac2g0961 . 1 965 Core DNA Replication Machinery Family AT1G77320 51.0 2.4e-264 909.4
Lac4g2802 . 1 200 Core DNA Replication Machinery Family AT1G80190 69.5 7.7e-77 284.3
Lac3g3108 . 144 288 Core DNA Replication Machinery Family AT3G12530 73.8 7.5e-61 230.7
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT1G19080 68.5 2.4e-69 259.2
Lac8g2885 . 1 184 Core DNA Replication Machinery Family AT3G55490 68.5 2.4e-69 259.2
Lac7g0224 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 4.5e-50 195.3
Lac9g1232 . 1 677 Core DNA Replication Machinery Family AT5G67100 62.2 2.6e-262 903.3
Lac9g1235 . 1 803 Core DNA Replication Machinery Family AT5G67100 53.5 4.6e-214 743.0
Lac13g0083 . 4 622 Core DNA Replication Machinery Family AT1G67630 62.1 6.2e-218 754.6
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac2g2776 . 1 430 Core DNA Replication Machinery Family AT5G41880 64.8 4.3e-168 588.6
Lac1g2327 . 1 1084 Core DNA Replication Machinery Family AT5G63960 79.5 0.0e+00 1754.2
Lac10g2621 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.8 1.1e-205 713.4
Lac4g2157 . 1 432 Core DNA Replication Machinery Family AT1G67320 63.6 1.6e-173 606.7
Lac9g2692 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2957.9
Lac10g0329 . 5 2043 Core DNA Replication Machinery Family AT1G08260 68.3 0.0e+00 2828.9
Lac9g2692 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2916.3
Lac10g0329 . 28 2156 Core DNA Replication Machinery Family AT2G27120 65.6 0.0e+00 2797.7
Lac3g2732 . 7 535 Core DNA Replication Machinery Family AT5G22110 60.2 1.1e-177 620.5
Lac4g1082 . 9 338 Core DNA Replication Machinery Family AT5G22110 61.7 6.0e-123 438.7
Lac9g2747 . 52 989 Core DNA Replication Machinery Family AT5G22010 61.6 3.3e-308 1055.0
Lac1g1062 . 196 391 Core DNA Replication Machinery Family AT5G22010 69.4 5.8e-71 266.9
Lac12g1394 . 81 200 Core DNA Replication Machinery Family AT5G22010 76.1 6.0e-52 203.8
Lac4g0414 . 216 351 Core DNA Replication Machinery Family AT5G22010 59.3 1.9e-42 172.2
Lac5g0598 . 1 334 Core DNA Replication Machinery Family AT1G63160 90.7 9.5e-173 603.6
Lac1g1629 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.6 1.2e-178 623.2
Lac2g0958 . 40 373 Core DNA Replication Machinery Family AT1G21690 81.5 5.4e-152 534.6
Lac8g1831 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 2.6e-155 545.8
Lac6g3094 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.4e-254 876.3
Lac5g0150 . 34 700 Core DNA Replication Machinery Family AT2G06510 52.1 1.9e-195 679.9
Lac3g0557 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 8.6e-249 857.1
Lac5g0150 . 10 809 Core DNA Replication Machinery Family AT5G45400 51.9 9.4e-225 777.7
Lac3g0557 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.9 1.5e-243 839.7
Lac5g0150 . 10 795 Core DNA Replication Machinery Family AT4G19130 55.1 6.6e-225 778.1
Lac3g3084 . 1 240 Core DNA Replication Machinery Family AT5G26680 92.1 2.0e-124 443.4
Lac3g3088 . 45 184 Core DNA Replication Machinery Family AT5G26680 76.4 8.2e-57 218.8
Lac7g0388 . 1 1119 Core DNA Replication Machinery Family AT1G08840 52.3 1.3e-297 1020.0
Lac7g0436 . 129 247 Core DNA Replication Machinery Family AT1G08840 72.5 3.0e-39 161.8
Lac7g1212 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 3.7e-114 408.7
Lac9g2623 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.5 2.6e-298 1021.9
Lac9g2623 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 2.0e-243 839.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35