Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0153 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGGGGTGAGGAGGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAACGACCTTACCCAGATTTTGACACTGCTTCAGAAGGGGTTCCATACCCCTACATAGGAGGGGCAAGTGCAAGTTCAACACCTGCTTGGGACTTCCCTCCTGTTAATCGCCACCCACATCCCAGATCTGACTCTAGATTTAAAGGTGTGTTCAGAGGAGACCAGACCCCTGGAGCCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGCGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTCAACAAGTGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAGATGGGAAGGGATAGTCCGATGACTTCAGCGAACAAAGATTGGACGCCGAGAAACTATAAGCCTTCTGGAAGTAAAGGTTATTTTCCATCTGACCAGCATTTTGATCAAGGAAGCAGCCACCACTATGCAGGGTCAAGTGCCTATCCAGGAGGCGGCGCGAAAGGTGACATGTCGTCTATGGAAGCATCACGCACGACAACCTCTTCTAGAGACGAACCTTCGGTTTCCATTAGCAATGCAAGCGACATCGAGGCGGAATGGGTCGAGGAAGATGAACCAGGAGTCTACATAACAATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTCAGATTCAGCCGTGAACGGTTCGGGGAGGTGAACGCGAAGCAATGGTGGGAACAGAACAGGGAGAGAATCCAAGCTCAATACCTATAA 1089 49.77 MFTCIACTKQTDDGGEEGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHPRSDSRFKGVFRGDQTPGADSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGYFPSDQHFDQGSSHHYAGSSAYPGGGAKGDMSSMEASRTTTSSRDEPSVSISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEVNAKQWWEQNRERIQAQYL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1267916 1271929 - Lag0017237.1 Lac5g0153 606795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0153 362 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Lac5g0153 362 Pfam Transcription factor regulating root and shoot growth via Pin3 306 361 IPR013591 -
Lac5g0153 362 MobiDBLite consensus disorder prediction 281 299 - -
Lac5g0153 362 MobiDBLite consensus disorder prediction 223 240 - -
Lac5g0153 362 MobiDBLite consensus disorder prediction 102 124 - -
Lac5g0153 362 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 362 IPR044532 -
Lac5g0153 362 MobiDBLite consensus disorder prediction 203 299 - -
Lac5g0153 362 ProSiteProfiles BRX domain profile. 307 362 IPR013591 -
Lac5g0153 362 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Lac5g0153 362 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Lac5g0153 362 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3006 Lac-Chr4:48308887 Lac5g0153 Lac-Chr5:1267916 2.90E-73 dispersed
Lac5g0153 Lac-Chr5:1267916 Lac8g1721 Lac-Chr8:35452805 3.60E-16 dispersed
Lac5g0153 Lac-Chr5:1267916 Lac6g3091 Lac-Chr6:48413656 1.40E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0153 - - - 0.0