Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0179 ATGAGTAGCAGTGAGATGGAGAAACCACCTAAAGAGAAGGAGACGAAGACACCGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGTGCTGGTGCAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCAATTCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCCCCCGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGGCTTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACGGCAGGCAGCTTAGAGGGGGAGGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGACCAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGTGGTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCGCAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGTTGAAGCATCTCAGAATGGTAACTCTATGCATGGTACTCAAAATGGTGGATCCAATACTCAGGCAATGGCTGTCATCCCATTGGCAGCTGCTGGGGCCCCGGGAGTCGTTCCTGGTCCCACAACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCTGCTATTCCTGCAATGCGTGGAAAGGTTCCATCAACTCCAGTTGCTGGAGGATTAGTTGCCCCTGGATCTCGGGATAGCGTACAGTCACAGCTTTGGTTGCAGGACGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAGTCAAACAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGACGAACTAGCACACCGAGCTGAAGCCTTGCAAGAAGAAAATGCCAATCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTTTCAGAGAATGCTTCTCTGAAGGAAAGACTTGGGGAAGTTCCGGGGAACGAAGAAGTGAGGGCCAGCAGGAACGGCCAGCGTTCGAGTAATGAAACCACACAACTTACAGAGTCAGAGGCTGTGCAAGTTGGTAACAAGAATTGA 1212 48.43 MSSSEMEKPPKEKETKTPPPTTQEQTSTTSAGAVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMASPNGITEASGNTAGSLEGEVKPPEVKEKLPIKRSKGSLGSLNMITGKTNELGKTSGTSANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEVEASQNGNSMHGTQNGGSNTQAMAVIPLAAAGAPGVVPGPTTNLNIGMDYWGASSAIPAMRGKVPSTPVAGGLVAPGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENANLRSEVNRIRSEYEQLLSENASLKERLGEVPGNEEVRASRNGQRSSNETTQLTESEAVQVGNKN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1506080 1510376 + Lag0017263.1 Lac5g0179 606821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0179 403 MobiDBLite consensus disorder prediction 377 403 - -
Lac5g0179 403 Coils Coil 317 365 - -
Lac5g0179 403 Pfam Disordered region downstream of MFMR 135 262 - -
Lac5g0179 403 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 304 319 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0179 403 Gene3D - 300 354 - -
Lac5g0179 403 Pfam bZIP transcription factor 297 359 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0179 403 MobiDBLite consensus disorder prediction 146 205 - -
Lac5g0179 403 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 299 362 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0179 403 SMART brlzneu 297 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0179 403 MobiDBLite consensus disorder prediction 1 41 - -
Lac5g0179 403 MobiDBLite consensus disorder prediction 19 36 - -
Lac5g0179 403 MobiDBLite consensus disorder prediction 119 205 - -
Lac5g0179 403 CDD bZIP_plant_GBF1 302 352 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0179 403 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Lac5g0179 403 MobiDBLite consensus disorder prediction 361 403 - -
Lac5g0179 403 MobiDBLite consensus disorder prediction 299 320 - -
Lac5g0179 403 MobiDBLite consensus disorder prediction 1 18 - -
Lac5g0179 403 PANTHER G-BOX-BINDING FACTOR 3-RELATED 22 387 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Lac5g0179 403 SUPERFAMILY Leucine zipper domain 300 356 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2892 Lac-Chr1:49833100 Lac5g0179 Lac-Chr5:1506080 4.20E-33 transposed
Lac7g0175 Lac-Chr7:1404184 Lac5g0179 Lac-Chr5:1506080 3.00E-27 transposed
Lac11g2454 Lac-Chr11:40730895 Lac5g0179 Lac-Chr5:1506080 5.80E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23807 PF16596 MFMR_assoc 2.00E-50 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0179 K09060 - csv:101206627 686.411