Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0203 ATGGTGGGTTTTCTCTTCTTCTCCACTATAAAGTTTCTTTCCCTTTTCCCACCACTTTCCCTCTCTGCAAATTCAACCATCAGGGTTTTTCTTCTTTTCATCTCTGTTTCTTCTGTTCTATTTCAGCGCAGTCAGATCTTTGCTGCCTATAAAGCTGGAAGGAAGTTCAGCTCTGTAATTTTTGCTGCTGTTGCTGTTTATTTTAGAGGTGTTTTAGGAGATCTTATAATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAGAGGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGATGATAGCTGCAACAGTACTGGCTCGGATGCCCCTTCTTCGGTAGCACAAGACCGGATGATTATTGTTGGGAATCAGCTCCCGATTCGAGCGCATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGGCTTGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGATGAAGTTGCACAAACTCTTTTGGACCGATTCAAGTGTGTCCCAACGTTCCTTCCTCCAGAGCTTTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTGTGGCCACTGTTTCACTATATGCTTCCTCTATCACCGGATCTCGGTGGCCGATTTGATCGGTCTCTCTGGCAAGCGTATCTTTCGGTTAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGCCCTGATGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCGTCTGAGATTTATCGAACCCTTCCCGTAAGAGATGAACTTCTTCGAGCACTATTGAACTCTGATCTTATTGGCTTCCATACATTTGATTATGCTAGGCACTTTTTATCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATTGGGCTTGAATACTATGGTCGTACTGTGAGCATTAAGATTCTTCCTGTCGGTATTCATATAGGCCAGCTTCAAAGTGTATTAAATCTCCCCGAGACTGTATCCAAAGTTGCAGAATTGCAAGATCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGACATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCATTTGAACAACTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGGAAAGATGTACAGGAGGTCGTGGCTGAAACTACTGCAACGGTGAATAGAATCAATGCAACATTTAGAAGGCCAGGATATGAGCCTGTGGTTTTGATTAACACTCCCTTGCAGTTTTACGAGCGAATCGCTTACTATGCAATTGCTGAGTGCTGCCTCGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTATGAGTATATTATATGTCGACAAGGCAATGAGAAGCTTGATGATGTTCTTGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTGTTGTCTGAGTTTATTGGGTGTTCCCCATCCCTCAGTGGAGCTATTCGGGTTAATCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCCCTGGTAATCCCCGAGGCGGAAAAGCAATTACGACATGAAAAGCATTATAGGTACGTTAGTACGCATGATGTTGCATACTGGGCACGCAGCTTTTTGCAGGATCTGGGCAGGGCTTGCAGAGACCATTCCATGAGGAGATGCTGGGGTATAGGTTTTGGTTTAGGTTTTCGAGTCATCGCCCTGGATCCAAATTTCCGGAAGCTTTCAGTTGAACATATTGTTTCAGTTTATAAGAGAACCTGCCACCGGGCAATCTTGTTAGATTATGATGGTATCATGATGCTTCCTGGCTCAATTAGCATGAATCCAACAGCTGAAGCCCTTGGAATCTTGAACAACTTGTGTAAAGATCCTAAGAATGTTGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACCGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTCTATCTTAGGCCAAATCATACTGCAGATTGGGAGACATGTGTAGGTGTGACCGATTTCGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACCGAGACAACTGACGGTTCTACAATCGAAACTAAAGAGAGTGCACTTGTTTGGAACTACCTTTATGCAGATCCTGATTTCGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCTAATGAGCCAGTTTCTGTCAAGAGTGGCCAACATATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGTATTGTAGCAGAATATCTCTTGCAAACAATGAAGGAGAGGGGAATGCTTCCCGATTTCGTTCTATGCATTGGAGACGATAGGTCGGATGAGGATATGTTCGAGGTGATAACGAGTGCAAGAGACACTCTTCCTCCCGTTGCCGAAGTGTTCGGTTGCACAGTCGGCCAGAAACCGAGCAAGGCGAAGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCCGAGCACGCCGCTAGAGCCGCTCCGCAGACGCCTCATAGAGTGGTAATTGCAGAGAGTAAATAA 2820 44.26 MVGFLFFSTIKFLSLFPPLSLSANSTIRVFLLFISVSSVLFQRSQIFAAYKAGRKFSSVIFAAVAVYFRGVLGDLIMVSRSYSNLLELASGGCSPTFGLGREKRRLPRVATVAGVLSELDDDSCNSTGSDAPSSVAQDRMIIVGNQLPIRAHRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDEVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQSVLNLPETVSKVAELQDRFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVNRINATFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTAEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNHTADWETCVGVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMKERGMLPDFVLCIGDDRSDEDMFEVITSARDTLPPVAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAAPQTPHRVVIAESK 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1772768 1776584 + Lag0017287.1 Lac5g0203 606845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0203 939 CDD HAD_TPP 671 907 - -
Lac5g0203 939 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 139 626 - -
Lac5g0203 939 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 132 390 - -
Lac5g0203 939 SUPERFAMILY HAD-like 670 915 IPR036412 -
Lac5g0203 939 CDD GT20_TPS 139 622 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac5g0203 939 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 103 917 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac5g0203 939 FunFam Alpha,alpha-trehalose-phosphate synthase 392 607 - -
Lac5g0203 939 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 799 928 - -
Lac5g0203 939 Gene3D Glycogen Phosphorylase B; 132 390 - -
Lac5g0203 939 Pfam Glycosyltransferase family 20 139 622 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac5g0203 939 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 669 786 - -
Lac5g0203 939 Pfam Trehalose-phosphatase 673 905 IPR003337 GO:0005992(InterPro)
Lac5g0203 939 NCBIfam HAD-IIB family hydrolase 672 873 IPR006379 -
Lac5g0203 939 NCBIfam trehalose-phosphatase 669 916 IPR003337 GO:0005992(InterPro)
Lac5g0203 939 Gene3D - 669 786 IPR023214 -
Lac5g0203 939 Gene3D - 799 930 IPR023214 -
Lac5g0203 939 Gene3D Glycogen Phosphorylase B; 391 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0218 Lac-Chr13:1552545 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac13g1298 Lac-Chr13:11938465 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac1g3435 Lac-Chr1:53783780 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac2g1136 Lac-Chr2:9028314 Lac5g0203 Lac-Chr5:1772768 3.10E-125 dispersed
Lac3g0693 Lac-Chr3:5344654 Lac5g0203 Lac-Chr5:1772768 0.00E+00 dispersed
Lac5g0203 Lac-Chr5:1772768 Lac9g2188 Lac-Chr9:41315927 1.10E-144 dispersed
Lac5g0203 Lac-Chr5:1772768 Lac12g0751 Lac-Chr12:7898140 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0203 K16055 - csv:101207192 1683.31