Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0235 | ATGACGGATTATCGTTTATCCACGATGAATCTCTGGACCGACGAGAACGCGTCGGTCATGGACGCTTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCCGCCTCCTCTCACTCTCTCCACCACCCACCGCCGCCGCAGTCCTCCGCATCCACCTCCACTCCACCGCCGGACCCGCCCAAGTCACTCGCCGTCTTCAACCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGAGCTAGGGAGAGCTGGACCTACGCGATTTTCTGGCAGTCGTCTTATGATTATTCCGGCGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAGGCGAAAATGGTCTCGTCGGCGGCGGAACAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCTTTGATTTCCGGGTCAGCCGCCGGCCCGGACGATGCGGTGGATGAGGAAGTTACGGACACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTTAGCTCGACGCCGATTTGGATCTCCGGCACCGACCGGCTGTCGGCGTCGTCCTGTGATCGGGCCAGACAGGGGAGGGTTTTCGGGTTGCAGACGATGGTGTGTATTCCATCGCCGAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACTTCAGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGAAACCACCGCCACCGCCGCCGATGAAGGGGAAAACGACCCGTCTTCGTTGTGGATCAGTGAGCCGTCGAGCACAATCGAGATGAAGGATTCGATTACCACCACCGTCCCTTCCTCTGGCGCTCCGGCGAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATCTCAGCGCGATTCAACAACCATCCCATCAAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTACGGCTTCGAATCGAACCCCTCAAAGACCACCGCCGCGACCACCGCCACCACCGCCGCCACCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGCAGCCTCTTCTCCGGCTACATAACAGAGGAACAGAACGAGAAAAAGAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCGGGCAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCCTCCATGATCCGAGAAGTCGACAGCTGCACCAAACCATCAGAACCCGAAAAACGACCACGAAAACGAGGGCGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTCGAAGCAGAGAGACAACGGCGGGAGAAACTAAACCAGAAATTCTACGCTCTCCGGGCGGTGGTTCCTAACGTATCGAAAATGGACAAGGCGTCGCTGCTCGGCGACGCCGTTTCGTACATCAACGAGCTGAAATCGAAGCTCCAAACGGCGGAATCGGAGAAGACGGAGATGGGGAAGCAGCTGGAGTTTCTGAAGAAGGACATGGGAGGGAAAGATAATCTGGGAAACTACACGAACCCCATCGATCAAGATTTGAAAATGGGGAACAGATCAAAGGCGATGGAGATCGAGATCGAGGTGAAAATCATGGGCTGGGACGCGATGATCAGAATCCAGAGCAGTAAAAAGAATCACCCGGCGGCGAGGTTGATGACGGCTTTGAAGGATTTGGATTTGGAAATGGTTCACGCCAGCGTTTCTGTGGTGAACGATCTGATGATTCAACAAGCAGCCGTGAAGATGGGAAGCAGATTCTACACACAGGAGCAGCTGAAAATGGCGCTCGTCGGCCGAGTCGCCGGTGTCGGCAGCGGCCATGGAATAATGTAG | 1977 | 54.78 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSTPIWISGTDRLSASSCDRARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETGSWQSETTATAADEGENDPSSLWISEPSSTIEMKDSITTTVPSSGAPAKPIHSENPSSSSLTENLSAIQQPSHQKQSQSFLNFSDYGFESNPSKTTAATTATTAATTTPSFKPESGGMLNFGNGSLFSGYITEEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASMIREVDSCTKPSEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQTAESEKTEMGKQLEFLKKDMGGKDNLGNYTNPIDQDLKMGNRSKAMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMVHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALVGRVAGVGSGHGIM | 658 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2102466 | 2104442 | + | Lag0017319.1 | Lac5g0235 | 606877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0235 | 658 | FunFam | Transcription factor bHLH13 | 463 | 537 | - | - | |
Lac5g0235 | 658 | MobiDBLite | consensus disorder prediction | 440 | 480 | - | - | |
Lac5g0235 | 658 | Coils | Coil | 516 | 543 | - | - | |
Lac5g0235 | 658 | MobiDBLite | consensus disorder prediction | 36 | 63 | - | - | |
Lac5g0235 | 658 | Pfam | Helix-loop-helix DNA-binding domain | 474 | 520 | IPR011598 | GO:0046983(InterPro) | |
Lac5g0235 | 658 | CDD | bHLH_AtAIB_like | 467 | 542 | - | - | |
Lac5g0235 | 658 | Gene3D | - | 469 | 546 | IPR036638 | GO:0046983(InterPro) | |
Lac5g0235 | 658 | MobiDBLite | consensus disorder prediction | 265 | 338 | - | - | |
Lac5g0235 | 658 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Lac5g0235 | 658 | MobiDBLite | consensus disorder prediction | 352 | 379 | - | - | |
Lac5g0235 | 658 | MobiDBLite | consensus disorder prediction | 352 | 374 | - | - | |
Lac5g0235 | 658 | PANTHER | MYC | 60 | 646 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Lac5g0235 | 658 | SMART | finulus | 476 | 525 | IPR011598 | GO:0046983(InterPro) | |
Lac5g0235 | 658 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 470 | 519 | IPR011598 | GO:0046983(InterPro) | |
Lac5g0235 | 658 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 473 | 539 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g1323 | Lac-Chr12:20396598 | Lac5g0235 | Lac-Chr5:2102466 | 8.80E-57 | dispersed | |
Lac5g0122 | Lac-Chr5:963610 | Lac5g0235 | Lac-Chr5:2102466 | 2.80E-29 | dispersed | |
Lac5g0235 | Lac-Chr5:2102466 | Lac6g1870 | Lac-Chr6:31639255 | 4.30E-28 | dispersed | |
Lac11g2634 | Lac-Chr11:42343405 | Lac5g0235 | Lac-Chr5:2102466 | 3.20E-39 | transposed | |
Lac11g2707 | Lac-Chr11:42913113 | Lac5g0235 | Lac-Chr5:2102466 | 1.30E-21 | transposed | |
Lac5g2001 | Lac-Chr5:38456156 | Lac5g0235 | Lac-Chr5:2102466 | 3.20E-53 | transposed | |
Lac7g0130 | Lac-Chr7:1037659 | Lac5g0235 | Lac-Chr5:2102466 | 3.20E-65 | transposed | |
Lac7g0463 | Lac-Chr7:3674860 | Lac5g0235 | Lac-Chr5:2102466 | 2.60E-14 | transposed | |
Lac11g2414 | Lac-Chr11:40380498 | Lac5g0235 | Lac-Chr5:2102466 | 9.40E-207 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23811 | PF14215 | bHLH-MYC_N | 2.70E-53 | CL0161 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g0235 | K13422 | - | csv:101205372 | 1071.23 |