Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0235 ATGACGGATTATCGTTTATCCACGATGAATCTCTGGACCGACGAGAACGCGTCGGTCATGGACGCTTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCCGCCTCCTCTCACTCTCTCCACCACCCACCGCCGCCGCAGTCCTCCGCATCCACCTCCACTCCACCGCCGGACCCGCCCAAGTCACTCGCCGTCTTCAACCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGAGCTAGGGAGAGCTGGACCTACGCGATTTTCTGGCAGTCGTCTTATGATTATTCCGGCGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGAAAGGCGAAAATGGTCTCGTCGGCGGCGGAACAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCTTTGATTTCCGGGTCAGCCGCCGGCCCGGACGATGCGGTGGATGAGGAAGTTACGGACACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTTAGCTCGACGCCGATTTGGATCTCCGGCACCGACCGGCTGTCGGCGTCGTCCTGTGATCGGGCCAGACAGGGGAGGGTTTTCGGGTTGCAGACGATGGTGTGTATTCCATCGCCGAACGGAGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACTTCAGATTTGATGAACAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGAAACCACCGCCACCGCCGCCGATGAAGGGGAAAACGACCCGTCTTCGTTGTGGATCAGTGAGCCGTCGAGCACAATCGAGATGAAGGATTCGATTACCACCACCGTCCCTTCCTCTGGCGCTCCGGCGAAGCCAATCCATTCGGAAAATCCCAGTTCCAGCAGCTTAACGGAAAATCTCAGCGCGATTCAACAACCATCCCATCAAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTACGGCTTCGAATCGAACCCCTCAAAGACCACCGCCGCGACCACCGCCACCACCGCCGCCACCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGCAGCCTCTTCTCCGGCTACATAACAGAGGAACAGAACGAGAAAAAGAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGGATCCTCTCTTTCACCTCTGGCGTGATCTTACCCTCCTCGGGCAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCCTCCATGATCCGAGAAGTCGACAGCTGCACCAAACCATCAGAACCCGAAAAACGACCACGAAAACGAGGGCGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTCGAAGCAGAGAGACAACGGCGGGAGAAACTAAACCAGAAATTCTACGCTCTCCGGGCGGTGGTTCCTAACGTATCGAAAATGGACAAGGCGTCGCTGCTCGGCGACGCCGTTTCGTACATCAACGAGCTGAAATCGAAGCTCCAAACGGCGGAATCGGAGAAGACGGAGATGGGGAAGCAGCTGGAGTTTCTGAAGAAGGACATGGGAGGGAAAGATAATCTGGGAAACTACACGAACCCCATCGATCAAGATTTGAAAATGGGGAACAGATCAAAGGCGATGGAGATCGAGATCGAGGTGAAAATCATGGGCTGGGACGCGATGATCAGAATCCAGAGCAGTAAAAAGAATCACCCGGCGGCGAGGTTGATGACGGCTTTGAAGGATTTGGATTTGGAAATGGTTCACGCCAGCGTTTCTGTGGTGAACGATCTGATGATTCAACAAGCAGCCGTGAAGATGGGAAGCAGATTCTACACACAGGAGCAGCTGAAAATGGCGCTCGTCGGCCGAGTCGCCGGTGTCGGCAGCGGCCATGGAATAATGTAG 1977 54.78 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSTPIWISGTDRLSASSCDRARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETGSWQSETTATAADEGENDPSSLWISEPSSTIEMKDSITTTVPSSGAPAKPIHSENPSSSSLTENLSAIQQPSHQKQSQSFLNFSDYGFESNPSKTTAATTATTAATTTPSFKPESGGMLNFGNGSLFSGYITEEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASMIREVDSCTKPSEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQTAESEKTEMGKQLEFLKKDMGGKDNLGNYTNPIDQDLKMGNRSKAMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMVHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALVGRVAGVGSGHGIM 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2102466 2104442 + Lag0017319.1 Lac5g0235 606877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0235 658 FunFam Transcription factor bHLH13 463 537 - -
Lac5g0235 658 MobiDBLite consensus disorder prediction 440 480 - -
Lac5g0235 658 Coils Coil 516 543 - -
Lac5g0235 658 MobiDBLite consensus disorder prediction 36 63 - -
Lac5g0235 658 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983(InterPro)
Lac5g0235 658 CDD bHLH_AtAIB_like 467 542 - -
Lac5g0235 658 Gene3D - 469 546 IPR036638 GO:0046983(InterPro)
Lac5g0235 658 MobiDBLite consensus disorder prediction 265 338 - -
Lac5g0235 658 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Lac5g0235 658 MobiDBLite consensus disorder prediction 352 379 - -
Lac5g0235 658 MobiDBLite consensus disorder prediction 352 374 - -
Lac5g0235 658 PANTHER MYC 60 646 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Lac5g0235 658 SMART finulus 476 525 IPR011598 GO:0046983(InterPro)
Lac5g0235 658 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983(InterPro)
Lac5g0235 658 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 473 539 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1323 Lac-Chr12:20396598 Lac5g0235 Lac-Chr5:2102466 8.80E-57 dispersed
Lac5g0122 Lac-Chr5:963610 Lac5g0235 Lac-Chr5:2102466 2.80E-29 dispersed
Lac5g0235 Lac-Chr5:2102466 Lac6g1870 Lac-Chr6:31639255 4.30E-28 dispersed
Lac11g2634 Lac-Chr11:42343405 Lac5g0235 Lac-Chr5:2102466 3.20E-39 transposed
Lac11g2707 Lac-Chr11:42913113 Lac5g0235 Lac-Chr5:2102466 1.30E-21 transposed
Lac5g2001 Lac-Chr5:38456156 Lac5g0235 Lac-Chr5:2102466 3.20E-53 transposed
Lac7g0130 Lac-Chr7:1037659 Lac5g0235 Lac-Chr5:2102466 3.20E-65 transposed
Lac7g0463 Lac-Chr7:3674860 Lac5g0235 Lac-Chr5:2102466 2.60E-14 transposed
Lac11g2414 Lac-Chr11:40380498 Lac5g0235 Lac-Chr5:2102466 9.40E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23811 PF14215 bHLH-MYC_N 2.70E-53 CL0161 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0235 K13422 - csv:101205372 1071.23