Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0266 | ATGGATTCACGGGAGAGGTCGATGCCCTCTGTTCATCAACCTCAGCCACAATCCACTCCACCCAACAGAATCATGCCCAACGCTTCCTATTCCACCAATTTGCCCAACACCAACAATACTTCCCCATTGATCAACCCCAATTCCGCAGCTGCCCAGATGATGTCCTCCGCATCGCGATTTCCCTTCAACTCCATGATGGGCTCCGCCTCTAAGCCCACCGAGTCCCCTAATGCCGCCTCTTATGACGGATCGCAGTCCGAATTGCGGACTGGTGGGTTTAACATTGATTCCGGGAAGAAGAAGAGAGGCCGCCCGAGGAAGTATTCGCCTGATGGGAACATCGCTTTGGGCTTAGCGCCTACCCCCATCACTTCTTCCGCCGTCCCCGCTGATTCCGCCGGCATGCACTCGCCGGATCCTCGCCCCAAGAAGAACAGAGGACGGCCGCCTGGTACGGGGAAGAGGCAGATGGATGCTTTGGGAACTGGCGGTGTTGGCTTTACTCCTCATGTCATTCTGGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACATCAGGGGCCGCGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACTCTTCACCAACCTTCAATGACAGCTGTGTTTAGTGAATGCACGGTATTGGTGACCCCTGACCAGCAGTTCAGGCTTATCTACATGGAGGGCCGATATGAAATCATCTCTCTATCAGGCTCCTTCTTGATTTCTGACAGTAATGGTAATCGAAGTCGAACAGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGCCAAGTTCTTGGTGGAGTTACCAACATGCTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGGCTCAAGTATACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTTAGTGCACCCGCGGCAACAGGCTGTCCCTCTGAAGGCGCATCAAATAATTCATCCGATGACAATGGTGGAAGCCCTTTGAGCCGGGGGCCTGGAATGTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAATTATGGGGTAGTCGAAATCAATAA | 1131 | 50.75 | MDSRERSMPSVHQPQPQSTPPNRIMPNASYSTNLPNTNNTSPLINPNSAAAQMMSSASRFPFNSMMGSASKPTESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLAPTPITSSAVPADSAGMHSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSHQGPRTVCILSAHGAVCNVTLHQPSMTAVFSECTVLVTPDQQFRLIYMEGRYEIISLSGSFLISDSNGNRSRTGGLSVSLASADGQVLGGVTNMLTAASTVQVIVGSFLVDGKKLGSSIQKSGPSSTSPNMLNFSAPAATGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQLWGSRNQ | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2586880 | 2595286 | + | Lag0017350.1 | Lac5g0266 | 606908 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0266 | 376 | Gene3D | - | 169 | 310 | - | - | |
| Lac5g0266 | 376 | SMART | AT_hook_2 | 143 | 155 | IPR017956 | GO:0003677(InterPro) | |
| Lac5g0266 | 376 | SMART | AT_hook_2 | 99 | 111 | IPR017956 | GO:0003677(InterPro) | |
| Lac5g0266 | 376 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 169 | 296 | IPR005175 | - | |
| Lac5g0266 | 376 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
| Lac5g0266 | 376 | MobiDBLite | consensus disorder prediction | 64 | 161 | - | - | |
| Lac5g0266 | 376 | MobiDBLite | consensus disorder prediction | 64 | 92 | - | - | |
| Lac5g0266 | 376 | ProSiteProfiles | PPC domain profile profile. | 163 | 318 | IPR005175 | - | |
| Lac5g0266 | 376 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 42 | 346 | IPR039605 | GO:0003680(InterPro) | |
| Lac5g0266 | 376 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 167 | 297 | - | - | |
| Lac5g0266 | 376 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Lac5g0266 | 376 | MobiDBLite | consensus disorder prediction | 306 | 359 | - | - | |
| Lac5g0266 | 376 | CDD | DUF296 | 168 | 296 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g0266 | Lac-Chr5:2586880 | Lac6g0075 | Lac-Chr6:678997 | 2.80E-56 | dispersed | |
| Lac5g0266 | Lac-Chr5:2586880 | Lac5g0267 | Lac-Chr5:2603522 | 4.00E-10 | tandem | |
| Lac11g2406 | Lac-Chr11:40332149 | Lac5g0266 | Lac-Chr5:2586880 | 9.50E-86 | transposed | |
| Lac11g2404 | Lac-Chr11:40314016 | Lac5g0266 | Lac-Chr5:2586880 | 6.70E-12 | wgd | |
| Lac12g1943 | Lac-Chr12:36229761 | Lac5g0266 | Lac-Chr5:2586880 | 7.80E-10 | wgd | |
| Lac13g1008 | Lac-Chr13:8513065 | Lac5g0266 | Lac-Chr5:2586880 | 4.90E-10 | wgd |
Pathway information