Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0267 ATGGCTGGATTGGATTTAGGAAGTCGATATCTAACTCATCTTCAGTCTGTCGATGATCCGGCAAATCGCGGCGGTCATTTCTCCGCCGGCGACCACGAAGACGACGACGATCCCAACCAAGCCCTCGGCGGCCCCGGCGACGTCGTCGGCCGCCGCCCCCGCGGCCGGCCACCGGGTTCCAAAAACAAGCCGAAGCCGCCGGTCATCATCACCCGCGAGAGCGCCAACACGCTGCGTGTCCACATCTTAGAGGTCGGCAGCGGCTGCGACGTCTTCGACTGCATCGCCACCTACGCCCGGCGGCGGCAGCGTGGGATCTGTATTTTGAGCGGCAGCGGCAACGTCACCAACGTCGGACTCCGCCAGCCCGCGGCGGCCGGCGCCGTCTTGACCCTTCACGGGAGGTTCGAGATTTTGTCGCTCTCCGGATCGTTCCTCCCGCCGCCAGCTCCGCCCGGGGCCACCAGTTTGACGATATTCTTGGCTGGCGGCCAGGGGCAGGTCGTCGGCGGGACGGTGGCTGGAGAATTAACGGCGGCCGGGCCGGTGATTCTGATTGCAGCTTCGTTTACTAATGTGGCGTATGAGAGATTACCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGGGGCCGCCACCGGCGGCAGCGGCGGCGGCGGCGGAGTGGGGAACAACAACAACAACCACCCATTTCAAGACCCATCAAATTCAGGACTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAGCTTCCACCTTTCTGA 771 62.0 MAGLDLGSRYLTHLQSVDDPANRGGHFSAGDHEDDDDPNQALGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCIATYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPGAATGGSGGGGGVGNNNNNHPFQDPSNSGLPFLNLPLHMQNVQLPPF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2603522 2604292 - Lag0017351.1 Lac5g0267 606909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0267 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 205 - -
Lac5g0267 256 PIRSF ESCAROLA 7 253 IPR014476 GO:0003680(InterPro)
Lac5g0267 256 Gene3D - 78 207 - -
Lac5g0267 256 MobiDBLite consensus disorder prediction 25 39 - -
Lac5g0267 256 MobiDBLite consensus disorder prediction 204 240 - -
Lac5g0267 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 191 IPR005175 -
Lac5g0267 256 FunFam AT-hook motif nuclear-localized protein 78 205 - -
Lac5g0267 256 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
Lac5g0267 256 MobiDBLite consensus disorder prediction 219 240 - -
Lac5g0267 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 246 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac5g0267 256 MobiDBLite consensus disorder prediction 15 69 - -
Lac5g0267 256 CDD DUF296 79 190 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2404 Lac-Chr11:40314016 Lac5g0267 Lac-Chr5:2603522 4.00E-81 dispersed
Lac12g1943 Lac-Chr12:36229761 Lac5g0267 Lac-Chr5:2603522 6.30E-76 dispersed
Lac13g0296 Lac-Chr13:2094686 Lac5g0267 Lac-Chr5:2603522 1.80E-19 dispersed
Lac5g0267 Lac-Chr5:2603522 Lac7g0365 Lac-Chr7:2817085 4.70E-79 dispersed
Lac5g0266 Lac-Chr5:2586880 Lac5g0267 Lac-Chr5:2603522 4.00E-10 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0267 - - - 0.0