Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0274 ATGGAAGAAAGTAGAAATCATCATCTTTCCGAACAAAGAACAAAGGGGTTTGCTAAAAGCACCAAGGATCAGAAACTTAATGTGTATGTGTGGGACATGGATGAGACTATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCCTTTTGTGGTTCAAAGGATGTTAAAAGGGGTGAAGAACTTGGAAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTTCTATGAACAAATAGAGAACTATAATCAGCCCTTTCTTGATGCATTGAGTGAATATGATGATGGCCGTGATCTTTCTAATTATGATTTTGACCAAGATGGTTTTGGTCCACCATATGATGATGGAAACAAAAGAAAACTGGCTTTTAGGCAACGTGCTATAGCCATTAAGTACGGAGAGGGCCTGCAGAAGATCTTTGATGAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGAGAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCGTTTTCAGATAAACCACCACTTGCCTCTGCTGATCGGACATCAAACACTACTTCTAGAAGTTCCCAGCATGTTAATGTCTTGGTGACTTCTGGATCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGGCTCGATAATTTGATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGGAAAGCTTCAATGTTTCCAGTGGATCAAGGAGCGTTTTAACAAGTCAAATGTTCGTTTCTGCGTAATAGGCGATGGATGGGAAGAGTGCGAAGCTGCACAGTCCATGAAATGGCCATTTGTTAAGATTGATCTACAACCTGGAAGTCCTCACAGGTTTCCTGGTCTGTCTTTGAAAACACTAGGCTTTTACTTCTCTGTTATTTATGCCCGAAGGTTATATCTCCGAACATCTCAAACCCTTACCATTAGAGCACTTCTTGGAGTCACTAGCACTGTTTCAATAACAGGTTGTCAAAGCCAAATAGTGTGCTCCGGATGTAAAAATCTGTTGATCTACCCTGCTGGTGCAACGTCCATTTGCTGTGCTCTTTGCCATGCTGTATCCCCTGTGCCAACTTCTGGCATAGCAATGGCTCGGCTGGTGTGTAGAGGCTGCCACACTCTGCTCATGTACAGTCGTGGGGCAACAAGTGTACAATGTTCTTGTTGTCGCACTGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTCATATCAACTGTGGGAACTGTAGGGTACTGCTCATGTACCAATGTGGAGCCCACTCTGTCAAATGTACACTTTGCAATTTTGTGACCTCGGTTGGTTGGGACTCGAAGAAGAGAATAATGCAGTCTGCAATGGAGAAGCTCAGCAATATGGGGATTGTTGCTAAAGAGAAACTCAAAATTTGTAGAGCCAAACTTCACGAGAAGGTGGAGAAAGCGACGGTGAAGACGGCGGAGGAGAGGAGGATTGCGGAGGAGAGAAGGAAGACGACGGAGGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCTCGACGTGCTGCTCGAAAGCTGAGGACTAGGAAGTCACATGTACATGGCGGCCATTTACACCATCATGCTCCGGTGGAGGGCGGCGCCGCCACTCATCTTGGCGGAGCAAATGTTCCGGCTTATCCTATAGCCAGCCAGGGCTACCATCCCGGGCATAAAATTTAA 1725 45.51 MEESRNHHLSEQRTKGFAKSTKDQKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKRGEELGKIWEKQILDLCDHHFFYEQIENYNQPFLDALSEYDDGRDLSNYDFDQDGFGPPYDDGNKRKLAFRQRAIAIKYGEGLQKIFDEQKMKLWEELYEMTDVYTERWFSSARAFLEECSFSDKPPLASADRTSNTTSRSSQHVNVLVTSGSLIPSLVKCLLFRLDNLITPGNVYSSWEVGKLQCFQWIKERFNKSNVRFCVIGDGWEECEAAQSMKWPFVKIDLQPGSPHRFPGLSLKTLGFYFSVIYARRLYLRTSQTLTIRALLGVTSTVSITGCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGWDSKKRIMQSAMEKLSNMGIVAKEKLKICRAKLHEKVEKATVKTAEERRIAEERRKTTEAEAKRELHEAKARRAARKLRTRKSHVHGGHLHHHAPVEGGAATHLGGANVPAYPIASQGYHPGHKI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2696024 2705180 - Lag0017358.1 Lac5g0274 606916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0274 574 PANTHER EYES ABSENT 11 307 IPR028472 GO:0004725(PANTHER)|GO:0004725(InterPro)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
Lac5g0274 574 Coils Coil 492 519 - -
Lac5g0274 574 MobiDBLite consensus disorder prediction 501 551 - -
Lac5g0274 574 Pfam LSD1 zinc finger 344 368 IPR005735 -
Lac5g0274 574 Pfam LSD1 zinc finger 383 407 IPR005735 -
Lac5g0274 574 Pfam LSD1 zinc finger 421 445 IPR005735 -
Lac5g0274 574 MobiDBLite consensus disorder prediction 522 538 - -
Lac5g0274 574 Pfam Late embryogenesis abundant (LEA) group 1 457 526 IPR005513 GO:0009793(InterPro)
Lac5g0274 574 MobiDBLite consensus disorder prediction 501 521 - -
Lac5g0274 574 NCBIfam EYA conserved domain 26 301 IPR006545 GO:0007275(InterPro)
Lac5g0274 574 FunFam Eyes absent homolog 27 293 - -
Lac5g0274 574 Gene3D - 27 289 IPR038102 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0274 K15616 - - csv:101203755 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2393 Lac-Chr11:40145597 Lac5g0274 Lac-Chr5:2696024 2.20E-09 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23813 PF03760 LEA_1 3.80E-17 No_clan Lac TF