Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0274 ATGGAAGAAAGTAGAAATCATCATCTTTCCGAACAAAGAACAAAGGGGTTTGCTAAAAGCACCAAGGATCAGAAACTTAATGTGTATGTGTGGGACATGGATGAGACTATCATCCTGCTCAAGTCCTTGTTGAATGGGACATATGCTGAGGCCTTTTGTGGTTCAAAGGATGTTAAAAGGGGTGAAGAACTTGGAAAAATTTGGGAGAAGCAGATTCTTGATCTGTGTGATCATCACTTCTTCTATGAACAAATAGAGAACTATAATCAGCCCTTTCTTGATGCATTGAGTGAATATGATGATGGCCGTGATCTTTCTAATTATGATTTTGACCAAGATGGTTTTGGTCCACCATATGATGATGGAAACAAAAGAAAACTGGCTTTTAGGCAACGTGCTATAGCCATTAAGTACGGAGAGGGCCTGCAGAAGATCTTTGATGAACAGAAGATGAAGCTCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGAGAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCGTTTTCAGATAAACCACCACTTGCCTCTGCTGATCGGACATCAAACACTACTTCTAGAAGTTCCCAGCATGTTAATGTCTTGGTGACTTCTGGATCATTGATACCCAGCCTTGTGAAATGCTTACTATTTCGGCTCGATAATTTGATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGGAAAGCTTCAATGTTTCCAGTGGATCAAGGAGCGTTTTAACAAGTCAAATGTTCGTTTCTGCGTAATAGGCGATGGATGGGAAGAGTGCGAAGCTGCACAGTCCATGAAATGGCCATTTGTTAAGATTGATCTACAACCTGGAAGTCCTCACAGGTTTCCTGGTCTGTCTTTGAAAACACTAGGCTTTTACTTCTCTGTTATTTATGCCCGAAGGTTATATCTCCGAACATCTCAAACCCTTACCATTAGAGCACTTCTTGGAGTCACTAGCACTGTTTCAATAACAGGTTGTCAAAGCCAAATAGTGTGCTCCGGATGTAAAAATCTGTTGATCTACCCTGCTGGTGCAACGTCCATTTGCTGTGCTCTTTGCCATGCTGTATCCCCTGTGCCAACTTCTGGCATAGCAATGGCTCGGCTGGTGTGTAGAGGCTGCCACACTCTGCTCATGTACAGTCGTGGGGCAACAAGTGTACAATGTTCTTGTTGTCGCACTGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTCATATCAACTGTGGGAACTGTAGGGTACTGCTCATGTACCAATGTGGAGCCCACTCTGTCAAATGTACACTTTGCAATTTTGTGACCTCGGTTGGTTGGGACTCGAAGAAGAGAATAATGCAGTCTGCAATGGAGAAGCTCAGCAATATGGGGATTGTTGCTAAAGAGAAACTCAAAATTTGTAGAGCCAAACTTCACGAGAAGGTGGAGAAAGCGACGGTGAAGACGGCGGAGGAGAGGAGGATTGCGGAGGAGAGAAGGAAGACGACGGAGGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCTCGACGTGCTGCTCGAAAGCTGAGGACTAGGAAGTCACATGTACATGGCGGCCATTTACACCATCATGCTCCGGTGGAGGGCGGCGCCGCCACTCATCTTGGCGGAGCAAATGTTCCGGCTTATCCTATAGCCAGCCAGGGCTACCATCCCGGGCATAAAATTTAA 1725 45.51 MEESRNHHLSEQRTKGFAKSTKDQKLNVYVWDMDETIILLKSLLNGTYAEAFCGSKDVKRGEELGKIWEKQILDLCDHHFFYEQIENYNQPFLDALSEYDDGRDLSNYDFDQDGFGPPYDDGNKRKLAFRQRAIAIKYGEGLQKIFDEQKMKLWEELYEMTDVYTERWFSSARAFLEECSFSDKPPLASADRTSNTTSRSSQHVNVLVTSGSLIPSLVKCLLFRLDNLITPGNVYSSWEVGKLQCFQWIKERFNKSNVRFCVIGDGWEECEAAQSMKWPFVKIDLQPGSPHRFPGLSLKTLGFYFSVIYARRLYLRTSQTLTIRALLGVTSTVSITGCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGWDSKKRIMQSAMEKLSNMGIVAKEKLKICRAKLHEKVEKATVKTAEERRIAEERRKTTEAEAKRELHEAKARRAARKLRTRKSHVHGGHLHHHAPVEGGAATHLGGANVPAYPIASQGYHPGHKI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2696024 2705180 - Lag0017358.1 Lac5g0274 606916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0274 574 PANTHER EYES ABSENT 11 307 IPR028472 GO:0004725(PANTHER)|GO:0004725(InterPro)|GO:0005634(PANTHER)|GO:0030154(PANTHER)|GO:0045739(PANTHER)|GO:0048856(PANTHER)
Lac5g0274 574 Coils Coil 492 519 - -
Lac5g0274 574 MobiDBLite consensus disorder prediction 501 551 - -
Lac5g0274 574 Pfam LSD1 zinc finger 344 368 IPR005735 -
Lac5g0274 574 Pfam LSD1 zinc finger 383 407 IPR005735 -
Lac5g0274 574 Pfam LSD1 zinc finger 421 445 IPR005735 -
Lac5g0274 574 MobiDBLite consensus disorder prediction 522 538 - -
Lac5g0274 574 Pfam Late embryogenesis abundant (LEA) group 1 457 526 IPR005513 GO:0009793(InterPro)
Lac5g0274 574 MobiDBLite consensus disorder prediction 501 521 - -
Lac5g0274 574 NCBIfam EYA conserved domain 26 301 IPR006545 GO:0007275(InterPro)
Lac5g0274 574 FunFam Eyes absent homolog 27 293 - -
Lac5g0274 574 Gene3D - 27 289 IPR038102 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2393 Lac-Chr11:40145597 Lac5g0274 Lac-Chr5:2696024 2.20E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23813 PF03760 LEA_1 3.80E-17 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0274 K15616 - csv:101203755 543.502