Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g0286 | ATGGAAGAACAAGAAGATATCGTTAAATTGAGACCTTCAACACAAAAGGGTATTAATTTCTCAGAGGTTAAACAAATAAAATTTCTTTCTCAGGTAATAGATGAGACACTTCGTGTCAGAAGTCCGACATTTGCAATTTTTCGTGAGGCAACAATCGATGTTGAGATTAATGGTAAAATTATACCAAAAGGATGGAGAGTCCTACCTTGGCTAGGGGAGATTTACATGGATGAAAAACTACATCCTTCCCCACAAGACTTCAATCCTTCAAGATGGGATAATTTTATAGCGAAACCAGGAGCTTTTACTCCGTTTGGATTAGGAGTTAGGCTGTGTCCGGGACGTGATCTTGCTCGACTAGAGATCTCGATTTTTCTTCACTATTTTCTCCTTAATTACAAGATGGAGCGACTTAATCCACAATGCCCATTGACTTACTTTCCAGCTCCTCATCCCAAAGACAAATGCTTGGCAAGAGTGCTCAAAGCTGCATGA | 495 | 39.6 | MEEQEDIVKLRPSTQKGINFSEVKQIKFLSQVIDETLRVRSPTFAIFREATIDVEINGKIIPKGWRVLPWLGEIYMDEKLHPSPQDFNPSRWDNFIAKPGAFTPFGLGVRLCPGRDLARLEISIFLHYFLLNYKMERLNPQCPLTYFPAPHPKDKCLARVLKAA | 164 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2862318 | 2863612 | - | Lag0017370.1 | Lac5g0286 | 606928 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g0286 | 164 | SUPERFAMILY | Cytochrome P450 | 4 | 160 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | PANTHER | CYTOCHROME P450 26 | 4 | 140 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Lac5g0286 | 164 | Pfam | Cytochrome P450 | 4 | 142 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | Gene3D | Cytochrome P450 | 1 | 162 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 105 | 114 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac5g0286 | 164 | PRINTS | B-class P450 signature | 103 | 112 | IPR002397 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | PRINTS | B-class P450 signature | 112 | 123 | IPR002397 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | PRINTS | B-class P450 signature | 31 | 42 | IPR002397 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | PRINTS | B-class P450 signature | 48 | 75 | IPR002397 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g0286 | 164 | PRINTS | B-class P450 signature | 76 | 91 | IPR002397 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g0286 | Lac-Chr5:2862318 | Lac7g0373 | Lac-Chr7:2868507 | 8.20E-53 | dispersed | |
| Lac5g0283 | Lac-Chr5:2820251 | Lac5g0286 | Lac-Chr5:2862318 | 1.50E-49 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g0286 | K04123 | - | csv:101207537 | 267.7 |