Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0347 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAACGGGCCTCCCGATAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCGATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAATATCAAGATAACGAAGTTGTGGTTGGGGTTTTCCCCGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCGGCCATATCAAACTCTGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATTTGACAGGTCCCTCACAGTCAACAGCATGGGAAACAATGGTACCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACTGCAGTTGAAAAACTCACTAAAGATCTATACACCATTTTACATGAACAGCAGTCTTACTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTTGAGAGTGAAACACCAATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTCGATAATAAACAGTTTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAAAAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTAGTGGACAGGGGTTCCTACAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAATTCGCCTCTGTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAAGATCAGCGAGAATTAATGAAGTATCTGCCCTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGGATTCTTTTAAGCAGCTGCTCACTGAAGGAGTATTTGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCAAGACATTGAGTAGACTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTGGTGTAGAGAATGTTCAAGGTTTTGCTGCTGCATCCAGTAGCTTCATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGTTCTCAGAAACAGCTTCATCTTCAGAAACAAGGACTGCAATGAAGAGTCCCAAAAGGGTGATGATGAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGTGACGGTTCTTGCTTCAGTCCAAGAAGTTTGTTTGCATTGCCTTCTGATGGAGGTTCCTTCACACTGGAGTCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGGTGCTCAGCAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1635 43.43 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNEVVVGVFPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETMVPSRKRTCVSRPKSTAVEKLTKDLYTILHEQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFVNEAYSESSILPVHYETEKKVVNFSTLGIGRKHSSGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLDSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSGVENVQGFAAASSSFMNGKRVLDGQNKKFSETASSSETRTAMKSPKRVMMKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGAQQASNSSSSVNLRLMHR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3595423 3601901 - Lag0017431.1 Lac5g0347 606989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0347 544 FunFam GATA transcription factor 27 3 85 - -
Lac5g0347 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Lac5g0347 544 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac5g0347 544 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 Pfam Asx homology domain 284 367 IPR028020 -
Lac5g0347 544 MobiDBLite consensus disorder prediction 110 149 - -
Lac5g0347 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
Lac5g0347 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 370 IPR044589 -
Lac5g0347 544 Gene3D - 289 371 IPR038108 -
Lac5g0347 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 MobiDBLite consensus disorder prediction 431 450 - -
Lac5g0347 544 MobiDBLite consensus disorder prediction 432 447 - -
Lac5g0347 544 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 MobiDBLite consensus disorder prediction 103 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0347 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2336 Lac-Chr11:39402707 Lac5g0347 Lac-Chr5:3595423 2.10E-193 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1069 . 81 371 C2C2-Gata Transcription Factor Family AT5G25830 53.1 1.1e-69 261.2
Lac5g2072 . 42 315 C2C2-Gata Transcription Factor Family AT3G51080 51.1 1.3e-54 211.1
Lac1g2978 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 51.4 5.2e-40 162.2
Lac5g0347 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 54.0 1.9e-135 480.3
Lac11g2336 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.4 7.1e-135 478.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23817 PF13919 ASXH 1.20E-08 No_clan Lac TF