Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0347 | ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAACGGGCCTCCCGATAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCGATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAATATCAAGATAACGAAGTTGTGGTTGGGGTTTTCCCCGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCGGCCATATCAAACTCTGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATTTGACAGGTCCCTCACAGTCAACAGCATGGGAAACAATGGTACCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACTGCAGTTGAAAAACTCACTAAAGATCTATACACCATTTTACATGAACAGCAGTCTTACTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTTGAGAGTGAAACACCAATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTCGATAATAAACAGTTTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAAAAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTAGTGGACAGGGGTTCCTACAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAATTCGCCTCTGTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAAGATCAGCGAGAATTAATGAAGTATCTGCCCTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGGATTCTTTTAAGCAGCTGCTCACTGAAGGAGTATTTGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCAAGACATTGAGTAGACTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTGGTGTAGAGAATGTTCAAGGTTTTGCTGCTGCATCCAGTAGCTTCATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGTTCTCAGAAACAGCTTCATCTTCAGAAACAAGGACTGCAATGAAGAGTCCCAAAAGGGTGATGATGAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGTGACGGTTCTTGCTTCAGTCCAAGAAGTTTGTTTGCATTGCCTTCTGATGGAGGTTCCTTCACACTGGAGTCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGGTGCTCAGCAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA | 1635 | 43.43 | MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNEVVVGVFPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETMVPSRKRTCVSRPKSTAVEKLTKDLYTILHEQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFVNEAYSESSILPVHYETEKKVVNFSTLGIGRKHSSGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLDSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSGVENVQGFAAASSSFMNGKRVLDGQNKKFSETASSSETRTAMKSPKRVMMKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGAQQASNSSSSVNLRLMHR | 544 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3595423 | 3601901 | - | Lag0017431.1 | Lac5g0347 | 606989 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0347 | 544 | FunFam | GATA transcription factor 27 | 3 | 85 | - | - | |
Lac5g0347 | 544 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 45 | - | - | |
Lac5g0347 | 544 | Gene3D | - | 3 | 85 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac5g0347 | 544 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0347 | 544 | Pfam | Asx homology domain | 284 | 367 | IPR028020 | - | |
Lac5g0347 | 544 | MobiDBLite | consensus disorder prediction | 110 | 149 | - | - | |
Lac5g0347 | 544 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0347 | 544 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 295 | 404 | IPR044867 | - | |
Lac5g0347 | 544 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 370 | IPR044589 | - | |
Lac5g0347 | 544 | Gene3D | - | 289 | 371 | IPR038108 | - | |
Lac5g0347 | 544 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0347 | 544 | MobiDBLite | consensus disorder prediction | 431 | 450 | - | - | |
Lac5g0347 | 544 | MobiDBLite | consensus disorder prediction | 432 | 447 | - | - | |
Lac5g0347 | 544 | CDD | ZnF_GATA | 6 | 51 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0347 | 544 | MobiDBLite | consensus disorder prediction | 103 | 151 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2336 | Lac-Chr11:39402707 | Lac5g0347 | Lac-Chr5:3595423 | 2.10E-193 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23817 | PF13919 | ASXH | 1.20E-08 | No_clan | Lac | TF |
Pathway information
