Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0347 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAACGGGCCTCCCGATAAGCCAGTATTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTATGATGATAAAAGGATCTCTAGGTTGAAGAACTTGTCGATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAATATCAAGATAACGAAGTTGTGGTTGGGGTTTTCCCCGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCGGCCATATCAAACTCTGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATTTGACAGGTCCCTCACAGTCAACAGCATGGGAAACAATGGTACCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACTGCAGTTGAAAAACTCACTAAAGATCTATACACCATTTTACATGAACAGCAGTCTTACTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTTGAGAGTGAAACACCAATGGTCTCCGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAGTCAGAAGCAAGCTCAATTTCAGTCGATAATAAACAGTTTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAAAAAGGTTGTAAATTTTTCTACTCTTGGAATTGGGAGAAAGCACTCTAGTGGACAGGGGTTCCTACAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAATTGCAAGCACTTGGAAATCATAATTCGCCTCTGTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAATTGACGAGTGAAGATCAGCGAGAATTAATGAAGTATCTGCCCTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGGATTCTTTTAAGCAGCTGCTCACTGAAGGAGTATTTGATTTCTCCTTTCCGGGTGCGAAAAGAGAAGACTGCAAGACATTGAGTAGACTCGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTGGTGTAGAGAATGTTCAAGGTTTTGCTGCTGCATCCAGTAGCTTCATGAATGGCAAGAGAGTGCTTGATGGCCAAAACAAAAAGTTCTCAGAAACAGCTTCATCTTCAGAAACAAGGACTGCAATGAAGAGTCCCAAAAGGGTGATGATGAAGACGAGCGTGGAAAGCAAGGAACTCGTCGACAGTGACGGTTCTTGCTTCAGTCCAAGAAGTTTGTTTGCATTGCCTTCTGATGGAGGTTCCTTCACACTGGAGTCTCTGCATTTTGATGAGGATAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTTGGTGCTCAGCAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1635 43.43 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNEVVVGVFPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETMVPSRKRTCVSRPKSTAVEKLTKDLYTILHEQQSYFSGSSEEDLLFESETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFVNEAYSESSILPVHYETEKKVVNFSTLGIGRKHSSGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLDSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSGVENVQGFAAASSSFMNGKRVLDGQNKKFSETASSSETRTAMKSPKRVMMKTSVESKELVDSDGSCFSPRSLFALPSDGGSFTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGAQQASNSSSSVNLRLMHR 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3595423 3601901 - Lag0017431.1 Lac5g0347 606989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0347 544 FunFam GATA transcription factor 27 3 85 - -
Lac5g0347 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Lac5g0347 544 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac5g0347 544 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 Pfam Asx homology domain 284 367 IPR028020 -
Lac5g0347 544 MobiDBLite consensus disorder prediction 110 149 - -
Lac5g0347 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 404 IPR044867 -
Lac5g0347 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 370 IPR044589 -
Lac5g0347 544 Gene3D - 289 371 IPR038108 -
Lac5g0347 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 MobiDBLite consensus disorder prediction 431 450 - -
Lac5g0347 544 MobiDBLite consensus disorder prediction 432 447 - -
Lac5g0347 544 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0347 544 MobiDBLite consensus disorder prediction 103 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2336 Lac-Chr11:39402707 Lac5g0347 Lac-Chr5:3595423 2.10E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23817 PF13919 ASXH 1.20E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0347 - - - 0.0