Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0363 ATGTACGGACAGAGTAATAGCTGCGAATCGGATTTTCTTCTTCTCGAGTCCATACGCCGCCATTTGTTGGGTGATTCCGACGCTCTCCGATGTGGGAATTTCGCCGTCGCCGGATCCGCAGCCCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGCTTGTACCCTTGTTTGACTGACAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCCGAAGACATGGTCCTCGCCGGAGTCCTCCGCGACGCCGTCCGGGTCGGTTGGGTTCCCTCCCTCGCCTCATCGCCGCCGGAGACTTTCAATTTCGATTTCTCCGAAGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTGATGGACACGAAGGTAGCGGTGACGGCGTCGGCGGCGGCGCCGTTGCCGGCGGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGAGTCCGGCAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCTCGGGTTTGGCTCGGGACGTTTGAGACGGCGGAGGATGCGGCTCTGGCTTATGACCGAGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTCAATTTTCCGCTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGCGGTCGTCGCCCCGATCGTCGCCGGAGCCTACTTCGTCGTTATCGTCGGTGGAGAGTGGGTCCCCTAAGCGGCGGAAGAAGGCGGACGGCTCGGCGGTGGCGGTGGCTCAAGCTGCGCCGGAGTTGATACAATTGGTGGTGGGGACCAATGCAATGCAAGTGGAAGCTGACGTGGCAAAGTGTACAAGTGGCGAGCAATGA 867 60.67 MYGQSNSCESDFLLLESIRRHLLGDSDALRCGNFAVAGSAAPVFCRSSSFGSLYPCLTDNWGDLPLKEDDSEDMVLAGVLRDAVRVGWVPSLASSPPETFNFDFSEVKPEPEILPPVNILPEVMDTKVAVTASAAAPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSLSSVESGSPKRRKKADGSAVAVAQAAPELIQLVVGTNAMQVEADVAKCTSGEQ 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3761186 3762052 - Lag0017447.1 Lac5g0363 607005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0363 288 MobiDBLite consensus disorder prediction 217 241 - -
Lac5g0363 288 Gene3D AP2/ERF domain 147 209 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 PANTHER DNA-BINDING DOMAIN 131 241 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac5g0363 288 CDD AP2 147 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 SMART rav1_2 148 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac5g0363 288 MobiDBLite consensus disorder prediction 212 255 - -
Lac5g0363 288 FunFam Ethylene-responsive transcription factor 2 147 207 - -
Lac5g0363 288 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677(InterPro)
Lac5g0363 288 Pfam AP2 domain 148 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0363 Lac-Chr5:3761186 Lac5g2761 Lac-Chr5:45999553 6.50E-45 dispersed
Lac5g0363 Lac-Chr5:3761186 Lac5g0364 Lac-Chr5:3789579 2.60E-25 tandem
Lac11g2326 Lac-Chr11:39301862 Lac5g0363 Lac-Chr5:3761186 1.90E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23818 PF00847 AP2 1.20E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0363 K09286 - csv:101203663 414.461