Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g0372 | ATGATGGCTACTACCAAAGATGATACTCTTGGTTTGAGCCTTGGATTATCCTTCGATTCTCATCGTCTGCAACTCAATCTCATGCCGTCTTGGACTAATGACGCCTCCTCAGATCGGACATCGGAAACCGGCCGATCGTTGCTTCGAGGAATCGATGTGAACCGGATGCCGCCGTCGTCGTCGGCGGCGGATTGCGAGGAGGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTTTCGAGCGTGAGTGGGAAGAGGAGTGAGCGGGAGGCCAACGGCGAGGATCTCGACGGCGATAGAGCTTGTTCTAGAGGGATAAGCGACGAGGAAGACGGGGAGACTTCGAGGAAGAAGCTTCGGCTAACGAAAGATCAGTCCGCCGTCTTGGAAGAGAGCTTCAAAGAGCACAACACTCTCAATCCTAAGCAAAAATTGGCGTTGGCTAAACAGTTGGGACTCCGCCCGAGGCAAGTCGAAGTCTGGTTCCAAAACCGAAGGGCAAGAACAAAGTTGAAGCAAACGGAAGTTGATTGCGAGTTTCTAAAGAGATGCTGCGAGAATCTGACGGAGGAAAACAGACGGTTGCAAAAAGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCGTCATGTGAGCGGGTGGCGGTCCCACCAGCCACGTCGGCCCCAGCTACCATCCCCAGAATGGGCCAGGCCCAGGCCCAGGCCCAACACGCTCGGCCCATCCACATCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTCAACGCCCTGCACCCTCGCTCGTAA | 840 | 56.19 | MMATTKDDTLGLSLGLSFDSHRLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRMPPSSSAADCEEEEAAMSSPNSTVSSVSGKRSEREANGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPATSAPATIPRMGQAQAQAQHARPIHINPWASAIPARPFNALHPRS | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3914509 | 3916380 | - | Lag0017456.1 | Lac5g0372 | 607014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g0372 | 279 | SUPERFAMILY | Homeodomain-like | 106 | 173 | IPR009057 | - | |
Lac5g0372 | 279 | MobiDBLite | consensus disorder prediction | 87 | 118 | - | - | |
Lac5g0372 | 279 | Pfam | Homeodomain | 116 | 170 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | MobiDBLite | consensus disorder prediction | 47 | 118 | - | - | |
Lac5g0372 | 279 | SMART | HOX_1 | 114 | 176 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | PRINTS | Lambda-repressor HTH signature | 152 | 168 | IPR000047 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | PRINTS | Lambda-repressor HTH signature | 143 | 152 | IPR000047 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | FunFam | Homeobox-leucine zipper protein 18 | 103 | 177 | - | - | |
Lac5g0372 | 279 | Pfam | Homeobox associated leucine zipper | 172 | 206 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0372 | 279 | MobiDBLite | consensus disorder prediction | 71 | 86 | - | - | |
Lac5g0372 | 279 | Gene3D | - | 122 | 168 | - | - | |
Lac5g0372 | 279 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 5 | 249 | IPR050762 | - | |
Lac5g0372 | 279 | SMART | halz | 172 | 215 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g0372 | 279 | ProSitePatterns | 'Homeobox' domain signature. | 147 | 170 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac5g0372 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 112 | 172 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | Coils | Coil | 171 | 208 | - | - | |
Lac5g0372 | 279 | CDD | homeodomain | 116 | 173 | IPR001356 | GO:0003677(InterPro) | |
Lac5g0372 | 279 | Pfam | HD-ZIP protein N terminus | 5 | 90 | IPR006712 | GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2648 | Lac-Chr10:40645162 | Lac5g0372 | Lac-Chr5:3914509 | 1.90E-57 | dispersed | |
Lac11g0555 | Lac-Chr11:5674788 | Lac5g0372 | Lac-Chr5:3914509 | 2.80E-46 | dispersed | |
Lac5g0372 | Lac-Chr5:3914509 | Lac7g0087 | Lac-Chr7:738420 | 7.40E-70 | dispersed | |
Lac5g0372 | Lac-Chr5:3914509 | Lac1g2717 | Lac-Chr1:48403763 | 1.10E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23820 | PF04618 | HD-ZIP_N | 3.00E-19 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g0372 | K09338 | - | csv:101223208 | 438.343 |