Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0372 ATGATGGCTACTACCAAAGATGATACTCTTGGTTTGAGCCTTGGATTATCCTTCGATTCTCATCGTCTGCAACTCAATCTCATGCCGTCTTGGACTAATGACGCCTCCTCAGATCGGACATCGGAAACCGGCCGATCGTTGCTTCGAGGAATCGATGTGAACCGGATGCCGCCGTCGTCGTCGGCGGCGGATTGCGAGGAGGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTTTCGAGCGTGAGTGGGAAGAGGAGTGAGCGGGAGGCCAACGGCGAGGATCTCGACGGCGATAGAGCTTGTTCTAGAGGGATAAGCGACGAGGAAGACGGGGAGACTTCGAGGAAGAAGCTTCGGCTAACGAAAGATCAGTCCGCCGTCTTGGAAGAGAGCTTCAAAGAGCACAACACTCTCAATCCTAAGCAAAAATTGGCGTTGGCTAAACAGTTGGGACTCCGCCCGAGGCAAGTCGAAGTCTGGTTCCAAAACCGAAGGGCAAGAACAAAGTTGAAGCAAACGGAAGTTGATTGCGAGTTTCTAAAGAGATGCTGCGAGAATCTGACGGAGGAAAACAGACGGTTGCAAAAAGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCGTCATGTGAGCGGGTGGCGGTCCCACCAGCCACGTCGGCCCCAGCTACCATCCCCAGAATGGGCCAGGCCCAGGCCCAGGCCCAACACGCTCGGCCCATCCACATCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTCAACGCCCTGCACCCTCGCTCGTAA 840 56.19 MMATTKDDTLGLSLGLSFDSHRLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRMPPSSSAADCEEEEAAMSSPNSTVSSVSGKRSEREANGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPATSAPATIPRMGQAQAQAQHARPIHINPWASAIPARPFNALHPRS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3914509 3916380 - Lag0017456.1 Lac5g0372 607014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0372 279 SUPERFAMILY Homeodomain-like 106 173 IPR009057 -
Lac5g0372 279 MobiDBLite consensus disorder prediction 87 118 - -
Lac5g0372 279 Pfam Homeodomain 116 170 IPR001356 GO:0003677(InterPro)
Lac5g0372 279 MobiDBLite consensus disorder prediction 47 118 - -
Lac5g0372 279 SMART HOX_1 114 176 IPR001356 GO:0003677(InterPro)
Lac5g0372 279 PRINTS Lambda-repressor HTH signature 152 168 IPR000047 GO:0003677(InterPro)
Lac5g0372 279 PRINTS Lambda-repressor HTH signature 143 152 IPR000047 GO:0003677(InterPro)
Lac5g0372 279 FunFam Homeobox-leucine zipper protein 18 103 177 - -
Lac5g0372 279 Pfam Homeobox associated leucine zipper 172 206 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0372 279 MobiDBLite consensus disorder prediction 71 86 - -
Lac5g0372 279 Gene3D - 122 168 - -
Lac5g0372 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 249 IPR050762 -
Lac5g0372 279 SMART halz 172 215 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g0372 279 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac5g0372 279 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677(InterPro)
Lac5g0372 279 Coils Coil 171 208 - -
Lac5g0372 279 CDD homeodomain 116 173 IPR001356 GO:0003677(InterPro)
Lac5g0372 279 Pfam HD-ZIP protein N terminus 5 90 IPR006712 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2648 Lac-Chr10:40645162 Lac5g0372 Lac-Chr5:3914509 1.90E-57 dispersed
Lac11g0555 Lac-Chr11:5674788 Lac5g0372 Lac-Chr5:3914509 2.80E-46 dispersed
Lac5g0372 Lac-Chr5:3914509 Lac7g0087 Lac-Chr7:738420 7.40E-70 dispersed
Lac5g0372 Lac-Chr5:3914509 Lac1g2717 Lac-Chr1:48403763 1.10E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23820 PF04618 HD-ZIP_N 3.00E-19 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0372 K09338 - csv:101223208 438.343