Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0412 ATGAGGGGTATTTCCTTTCACTTTCAGGGGAAGGGGGAGCTGGAAATTTCTGCCGCTTTTTCTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGAGACTTTCAGTTTCAACAGCAAGAACAAGACGAGGAAGAACAAGAAGAAGGGTTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGTGGTGGCGGTGGCGGTGGCGGTGGCTGTGTTCCTTCACTTCCGCCGGAGACTCCTGCTGTTGAGCCGCTCGCCGGAGCTGGGGTTGGGTCTGCCATTTTTCCCGGTGGATTGGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAATCGGCTGGACCAGAACAGTCGTTTCTCCGGTGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTGGGGATTAAAGGTCTTTTGCAAAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGATCAGGGTTCCGAATTCGACCCCGGTGCTGCTGCTGGTAATGTTCTTGCCAATATCAATCCTAATTTATCGTTTCCTCTTCCTGCTTGTACTGGGTTTTCTGATGTTAATGGTAATAATAAGGCTTTTAGCAGAAGCACTTGTGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGGCTGAACAATCGCAGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTAATGGGTCTGTTGAGAATCTTGTTGTTCCTGTTTCTGGTATGATTTACCCTCCGCAGCTTCAGCCATTTGAGAGCCCTGATGAGAAGCCTCAGAATTTGAATGCTCAGGTTTTGTTGAACCAGCATCAGCAGCCTCAGAATCCAAGCTTTTTTGTGCCATTGACATTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCACAATTCAAGTGGAGGGGTCGACCCGAATGGGCAGATCCCGAAAGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTGCAGCAGCAACAGCAGCAGCAGCTTGGTTATCCACCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCGAAAGTTGTAGGGCTCGGCGACGAAATGGCGTATCACAATCCCCCACAGCAACAGCATCCGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGGTCCTCCTTATGAACAACCCAGTTAATCCTCCTCCACCTCGCTGCCCGACACCGGTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTCTTTTCAGAAATCTCCCCGCTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCCCTCGATGATGTCGATCGAATTCACATTGTTGATTTCGATATTGGTTTCGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCTCCATCGCTAAAAATCACTGCTTTTGCCTCTCCCTCCACTCACCATCCAATTGAACTCGGGCTGATGCGTGATAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAATCAGAACTCCTTCTCCTTGCCATTTTCTCGAGCAAGCGAAAACGAGGCTATAGCAGTAAACTTCCCTCTATGGTCCTCATCAAATCAACCTGCAATGCTTCCGTCTCTCCTCCGGTTTATCAAGCAACTCTCACCGAAAATTGTGGTATCACTGGACCGAGGGTGTGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATTAATATGAATTCGGATGCTGTGAACAAGATCGAAAGGTTTCTTTTGCAACCAAGAATTGAAAGCACTGTTCTGGGTCGGCTTCGAGCGCCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCTGCCGGGTACACGCCAGTAACATTCAGCAACTTCACTGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTTTTATGCTGGCAGCGCCGGGAACTCATATCTGCTTCAGCTTGGAGGTGTTGA 2346 48.21 MRGISFHFQGKGELEISAAFSSSSSPICSGFAEKWVKKGDFQFQQQEQDEEEQEEGFSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGGGCVPSLPPETPAVEPLAGAGVGSAIFPGGLERCGVGLEDLESMWSESAGPEQSFLRWIAGDVVEDPSLGIKGLLQNGNIPFDLDGNAGIGIVDQGSEFDPGAAAGNVLANINPNLSFPLPACTGFSDVNGNNKAFSRSTCGVVNYKSSSLGLNNRSHGNFNVQNPIFNGSVENLVVPVSGMIYPPQLQPFESPDEKPQNLNAQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRHNSSGGVDPNGQIPKVPFMDPGNEIFLRNHQLQVQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMAYHNPPQQQHPQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLVLLMNNPVNPPPPRCPTPVDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRDNLTQFANDIGISFEFEVVNFDSLNQNSFSLPFSRASENEAIAVNFPLWSSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4372862 4375207 - Lag0017496.1 Lac5g0412 607054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0412 781 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 387 779 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac5g0412 781 Pfam GRAS domain family 419 780 IPR005202 -
Lac5g0412 781 MobiDBLite consensus disorder prediction 71 107 - -
Lac5g0412 781 ProSiteProfiles GRAS family profile. 409 780 IPR005202 -
Lac5g0412 781 MobiDBLite consensus disorder prediction 71 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1443 Lac-Chr12:25636938 Lac5g0412 Lac-Chr5:4372862 2.10E-135 dispersed
Lac5g0412 Lac-Chr5:4372862 Lac8g2990 Lac-Chr8:46753538 1.70E-39 dispersed
Lac5g0412 Lac-Chr5:4372862 Lac5g2049 Lac-Chr5:38957428 9.90E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23824 PF03514 GRAS 1.60E-94 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0412 K27747 - csv:101218630 1308.12