Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0491 ATGATAGCGTTCATTAGACTTCGGAATTTATCGTACAAATTCCGAAACGAAACTGAACTAATTAGATGTTTCCATTCCGGAACCAAACTGCAATTCAGTTCTCCGGATTCTTCCTTGTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCCTTACCGCCTTACGAAGCTGCTGTTAAGCTGAAAGCTGCAGCGGCTTCCTTCGGCGTCGTTCGGTACATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTATGTGCCACAAGTTGTTAGGGAGCAGAGAAGAGAGAGGAAGATGTTGAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGAAGGAATTTTTATACGAATGAGAAGTTAGTGAACCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATAGAATCTGCGAAAGGTAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTACAAGAATGCTGCCAGGGATGTTTTGACTCCAAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTGGTGAAGACTGTTTCGAATAAGCCAGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTCGAGATTATGGATAGGAGAAGAGCTGAGTGTTTGGTTCTTGTATCAGATGATTCAGATTTTGTGAATGTTTTGAAGGAGGCTAAATTGAGATGTCTCAGGACAGTTGTTGTAGGGGATGTTAATGATGGGCCATTGAAGAGAAATGCTGATACAGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAGAAGGAGGCTGTGACTGTTGTGGGGAAATGGAAGGATCGAGATATTTTGAAGAGTTTGGAATGGACTTACAATCCTCAATTGGAGAAGAAAGTGTTTGGTTTGGATGATATTGGAGAGGTTGAAGATGTTGAGGGTTCTGTTGAAGGGGGAAGTTGTGAGAATATGCAAAATGATAACAGTGGTGCTTGGTGGGATCTCAGCTCTGATACTGAAACTAACTAA 1077 41.78 MIAFIRLRNLSYKFRNETELIRCFHSGTKLQFSSPDSSLSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRYMVAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLTPKVGYGLADELKRAGFLVKTVSNKPEAADVELRNDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADTGFSWKEILMGKAKKEAVTVVGKWKDRDILKSLEWTYNPQLEKKVFGLDDIGEVEDVEGSVEGGSCENMQNDNSGAWWDLSSDTETN 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5512452 5513528 - Lag0017575.1 Lac5g0491 607133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0491 358 MobiDBLite consensus disorder prediction 330 358 - -
Lac5g0491 358 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Lac5g0491 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Lac5g0491 358 CDD PIN_LabA-like 129 260 - -
Lac5g0491 358 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Lac5g0491 358 Pfam NYN domain 191 271 IPR021139 GO:0004540(InterPro)
Lac5g0491 358 Gene3D - 36 279 - -
Lac5g0491 358 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 35 356 - -
Lac5g0491 358 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0342 Lac-Chr2:2561836 Lac5g0491 Lac-Chr5:5512452 1.10E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23827 PF01936 NYN 2.90E-10 CL0280 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0491 - - - 0.0