Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0514 ATGGAGGGACGAGGAGGGGATGCCGGAAATGGGGTTACAGCAGTGGCCGGATCAGATCCTCCGCGGTCCGGAACGGCGGCTCCGGTGGGTTCTGGGGCGGCGGCCTCGGGGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCCGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCGCCGGCGCCGTCGGCGGTGATCGATTTCTCGGCGGAGAAACGTGGGAAAGTCCGGCCCGCGAGCTCCTTGAGTAAATCCAAATACGAAGTGGAGAATTTAGGTGAATGGTTACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACTGTCAACACTGGTGAGGACGTTACAATGAAGGTTCTCTCTTTTTCCCAACAAGGGCCTCGAGCCATCTGCATTCTCTCCGCAAACGGCGTGATTTCGAGCGTCACGCTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTCGAGATATTGTCGTTGTCGGGATCGTTCATGCCGAGTGAGAGTGCAGGAACAAGGAGTAGAACCGGTGGAATGAGCGTCTCCTTAGCAAGTCCAGACGGACGTGTCGTTGGTGGCGGAGTTGCTGGTTTGTTAGTAGCTGCTAGTCCTGTTCAGGTGGTAGTAGGAAGCTTTATATCTGGGAACCAGCATGAGCAAAAGCCGAAGAAGCCGAAACAGGACGTCGTATTACCGGTTTCTGCTCTTCCAATCTCCAGCACTGAACCGAAGTCATACACCACGACGACGACGACGACGACATCTTTTCGTGCTGAAACTTGGGCACCATTGGTTCCAGATTTGAGAAGTCAGCCAACTGATATTAATGTATCTTTAACCAGTGGTTAA 894 53.8 MEGRGGDAGNGVTAVAGSDPPRSGTAAPVGSGAAASGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPSAVIDFSAEKRGKVRPASSLSKSKYEVENLGEWLPCSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESAGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEQKPKKPKQDVVLPVSALPISSTEPKSYTTTTTTTTSFRAETWAPLVPDLRSQPTDINVSLTSG 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5834969 5837147 - Lag0017598.1 Lac5g0514 607156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0514 297 CDD DUF296 113 204 IPR005175 -
Lac5g0514 297 MobiDBLite consensus disorder prediction 1 69 - -
Lac5g0514 297 Gene3D - 114 244 - -
Lac5g0514 297 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 232 - -
Lac5g0514 297 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 260 IPR039605 GO:0003680(InterPro)
Lac5g0514 297 ProSiteProfiles PPC domain profile profile. 109 254 IPR005175 -
Lac5g0514 297 FunFam AT-hook motif nuclear-localized protein 1-like 114 244 - -
Lac5g0514 297 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 227 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0053 Lac-Chr2:418593 Lac5g0514 Lac-Chr5:5834969 1.20E-53 dispersed
Lac5g0514 Lac-Chr5:5834969 Lac7g0322 Lac-Chr7:2496090 2.10E-78 dispersed
Lac9g2667 Lac-Chr9:45017792 Lac5g0514 Lac-Chr5:5834969 7.30E-33 transposed
Lac11g2200 Lac-Chr11:38130348 Lac5g0514 Lac-Chr5:5834969 2.20E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0514 - - - 0.0