Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g0531 ATGAGAAGGGTTCGTCGGCTTTGTCTTTCTCATGCTCTTCTGTTCTTGATTCCATTTCTCCTCGGAATTTGCTCCGCCGCCACTGAGAAGGACATTTTGCTTCAGTTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAGAACTTGGGTCGCCGGCGAGGATCATTGCCGGAATTTCAGCGGCGTGTTCTGTAACACTGATGGGTTTGTGGAGAAGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTGCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCGATTGAATATGGCACCATTGCTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTTTGTCAGGCTCGGTCCCGGAGTTCATCGGCGATTTGCCGAACATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATCCCTTCAGCTGTGTTCAAGAATTGTTTCAAAGCTAGATTTGTTTCATTTTCTCATAACAGATTTTCAGGTATGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAACAATAATCTAAGTGGGAGCATTCCTTTGCAACTCTGTAACATTCAGAGATTAGAGTATGTTTCTGTGAGAAGCAATGCACTGTCTGGGAGTGTCCAAGGACAGTTCTCTGCTTGCCAGAGCTTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGATCGCCACCGTTCGAGGTTCTCAGATTCAAAAACATCACTTATTTTAATGTTTCATATAACAGTTTTAGTGGGGGAATTGCAGAGATTGAGGGTTGTAGTGATAGTCTGGAAGTTCTTGATGTTTCATGGAATGGTTTGGATGGGGAGATCCCATTGAGCATTGCAAAGTGTGGCAGTCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGAACTTGCAGATTTGAAAAAGCTTTTGGTGATTCGGTTGGGTTCTAATTCGATCACCGGGACGGTTCCAGCCGTTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATACCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTTGATATTTCTGGCAATGCATTGGATGGGGGAATTCCTCAATCTCTTTATAACATGACATACCTTAAAATTCTTGATCTTCATGATAACCATCTGAACAGAAGCATTCCGTCGACGCTTGGGAGCCTCTCGAAGCTACAGTTTCTCGATCTATCTCGAAACCTGCTATCTGGTTCGATACCAGCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCTTTCAACAACCTTTCGGGCACCATACCTCCCGTGAAGACGATCCAAGATTTCGGGCCTTCTGCATTCTCAAACAATCCTTTGCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAAATAACACCACTGGCACGACTTCCACATCGAAGAAGCCAAAGGTTCTTAGTCCATCTGCAATCATTGCAATCGTAGCAGCGGTCGTGATCCTGGTCGGGGTTTGCGTGATATCCATTTTGAACCTAATGGCTCGGACAAGGAAGGCAAGGAGCACTGAAATCATCGAGAGCACGCCACTCGGTTCAACCGATTCAGGCGTCATAATTGGGAAGCTGGTTCTTTTCAGCAAAACTTTGCCATCAAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGTCTGATAGGGGGTGGCTCGATTGGCACCGTCTACAAGACGAGTTTCGAGGGCGGAGTCTCCATCGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTTGAGACTGAAATTGGACGTTTAGGAAACATTAAACACCCGAACTTAGTCGCTTTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTGTCTGAATTCGTAGCAAACGGCAACCTTTACGACAATCTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGCTACATTGGTCTAGGAGATACCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGGCCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGACGAAAACTACGACGCCAAGTTATCCGATTACGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTCGCACCGGAGTTAGCACAAAGTTTGAGAGTAAGTGAAAAATGCGACGTCTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAATGGTTCTGCTTCTGACTGTTTCGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCCGAGATCCCTTCGAAGAGACCAAGCATGGCCGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGGATCGTAG 2649 44.81 MRRVRRLCLSHALLFLIPFLLGICSAATEKDILLQFKDAVTEDPFDFLRTWVAGEDHCRNFSGVFCNTDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGTIATLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNGFTGEIPSAVFKNCFKARFVSFSHNRFSGMIPSTILNCLSLEGFDFSNNNLSGSIPLQLCNIQRLEYVSVRSNALSGSVQGQFSACQSLKLVDLSSNLFTGSPPFEVLRFKNITYFNVSYNSFSGGIAEIEGCSDSLEVLDVSWNGLDGEIPLSIAKCGSLKILDLESNKLVGKIPAELADLKKLLVIRLGSNSITGTVPAVFGNIELLQVLNLHSLKLVGEIPDDITSCRFLLELDISGNALDGGIPQSLYNMTYLKILDLHDNHLNRSIPSTLGSLSKLQFLDLSRNLLSGSIPATLENLTLLHHFNVSFNNLSGTIPPVKTIQDFGPSAFSNNPLLCGAPLDPCSANNTTGTTSTSKKPKVLSPSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGVSIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVANGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCRPPILHLNIKSTNILLDENYDAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLENGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6006762 6009511 + Lag0017615.1 Lac5g0531 607173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g0531 882 CDD STKc_IRAK 601 876 - -
Lac5g0531 882 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Lac5g0531 882 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 120 141 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 143 162 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Lac5g0531 882 Pfam Protein kinase domain 599 871 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0531 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Lac5g0531 882 FunFam Leucine-rich repeat receptor-like protein kinase TDR 254 501 - -
Lac5g0531 882 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 164 253 - -
Lac5g0531 882 SMART LRR_typ_2 430 454 IPR003591 -
Lac5g0531 882 SMART LRR_typ_2 141 165 IPR003591 -
Lac5g0531 882 SMART LRR_typ_2 406 429 IPR003591 -
Lac5g0531 882 SMART LRR_typ_2 334 357 IPR003591 -
Lac5g0531 882 SUPERFAMILY L domain-like 28 279 - -
Lac5g0531 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
Lac5g0531 882 PANTHER OS05G0588300 PROTEIN 170 279 IPR050994 -
Lac5g0531 882 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Lac5g0531 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 671 - -
Lac5g0531 882 Gene3D Ribonuclease Inhibitor 23 282 IPR032675 -
Lac5g0531 882 SUPERFAMILY L domain-like 259 498 - -
Lac5g0531 882 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 672 882 - -
Lac5g0531 882 Gene3D Ribonuclease Inhibitor 283 378 IPR032675 -
Lac5g0531 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 163 - -
Lac5g0531 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g0531 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0531 Lac-Chr5:6006762 Lac7g1197 Lac-Chr7:11096345 2.50E-87 dispersed
Lac5g0531 Lac-Chr5:6006762 Lac8g2839 Lac-Chr8:45589580 7.00E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86187 PF00069 Pkinase 2.10E-35 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g0531 - - - 0.0